Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07835

Experiment: Filtered_supernatant_MT80_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS07825 and QEN71_RS07830 are separated by 123 nucleotidesQEN71_RS07830 and QEN71_RS07835 are separated by 581 nucleotidesQEN71_RS07835 and QEN71_RS07840 are separated by 31 nucleotidesQEN71_RS07840 and QEN71_RS07845 are separated by 22 nucleotides QEN71_RS07825: QEN71_RS07825 - cytochrome ubiquinol oxidase subunit I, at 1,735,657 to 1,737,051 _RS07825 QEN71_RS07830: QEN71_RS07830 - hypothetical protein, at 1,737,175 to 1,737,351 _RS07830 QEN71_RS07835: QEN71_RS07835 - 4-oxalocrotonate tautomerase, at 1,737,933 to 1,738,121 _RS07835 QEN71_RS07840: QEN71_RS07840 - class II aldolase/adducin family protein, at 1,738,153 to 1,738,932 _RS07840 QEN71_RS07845: QEN71_RS07845 - urea transporter, at 1,738,955 to 1,739,902 _RS07845 Position (kb) 1737 1738 1739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1737.164 kb on - strandat 1737.164 kb on - strandat 1737.164 kb on - strandat 1737.164 kb on - strandat 1737.291 kb on + strand, within QEN71_RS07830at 1737.291 kb on + strand, within QEN71_RS07830at 1737.469 kb on - strandat 1737.469 kb on - strandat 1737.469 kb on - strandat 1737.469 kb on - strandat 1737.478 kb on - strandat 1737.912 kb on - strandat 1737.984 kb on + strand, within QEN71_RS07835at 1737.984 kb on + strand, within QEN71_RS07835at 1738.001 kb on + strand, within QEN71_RS07835at 1738.001 kb on + strand, within QEN71_RS07835at 1738.002 kb on - strand, within QEN71_RS07835at 1738.002 kb on - strand, within QEN71_RS07835at 1738.041 kb on - strand, within QEN71_RS07835at 1738.041 kb on - strand, within QEN71_RS07835at 1738.041 kb on - strand, within QEN71_RS07835at 1738.046 kb on + strand, within QEN71_RS07835at 1738.046 kb on + strand, within QEN71_RS07835at 1738.046 kb on + strand, within QEN71_RS07835at 1738.046 kb on + strand, within QEN71_RS07835at 1738.047 kb on - strand, within QEN71_RS07835at 1738.049 kb on + strand, within QEN71_RS07835at 1738.050 kb on - strand, within QEN71_RS07835at 1738.115 kb on + strandat 1738.115 kb on + strandat 1738.115 kb on + strandat 1738.126 kb on + strandat 1738.126 kb on + strandat 1738.127 kb on - strandat 1738.127 kb on - strandat 1738.127 kb on - strandat 1738.127 kb on - strandat 1738.127 kb on - strandat 1738.127 kb on - strandat 1738.140 kb on + strandat 1738.141 kb on - strandat 1738.145 kb on + strandat 1738.238 kb on + strand, within QEN71_RS07840at 1738.238 kb on + strand, within QEN71_RS07840at 1738.238 kb on + strand, within QEN71_RS07840at 1738.238 kb on + strand, within QEN71_RS07840at 1738.238 kb on + strand, within QEN71_RS07840at 1738.239 kb on - strand, within QEN71_RS07840at 1738.239 kb on - strand, within QEN71_RS07840at 1738.239 kb on - strand, within QEN71_RS07840at 1738.239 kb on - strand, within QEN71_RS07840at 1738.239 kb on - strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.355 kb on + strand, within QEN71_RS07840at 1738.356 kb on - strand, within QEN71_RS07840at 1738.356 kb on - strand, within QEN71_RS07840at 1738.356 kb on - strand, within QEN71_RS07840at 1738.356 kb on - strand, within QEN71_RS07840at 1738.356 kb on - strand, within QEN71_RS07840at 1738.356 kb on - strand, within QEN71_RS07840at 1738.372 kb on - strand, within QEN71_RS07840at 1738.478 kb on + strand, within QEN71_RS07840at 1738.478 kb on + strand, within QEN71_RS07840at 1738.479 kb on - strand, within QEN71_RS07840at 1738.479 kb on - strand, within QEN71_RS07840at 1738.496 kb on + strand, within QEN71_RS07840at 1738.497 kb on - strand, within QEN71_RS07840at 1738.497 kb on - strand, within QEN71_RS07840at 1738.576 kb on - strand, within QEN71_RS07840at 1738.576 kb on - strand, within QEN71_RS07840at 1738.788 kb on + strand, within QEN71_RS07840at 1738.788 kb on + strand, within QEN71_RS07840at 1738.788 kb on + strand, within QEN71_RS07840at 1738.788 kb on + strand, within QEN71_RS07840at 1738.789 kb on - strand, within QEN71_RS07840at 1738.789 kb on - strand, within QEN71_RS07840at 1738.789 kb on - strand, within QEN71_RS07840at 1738.789 kb on - strand, within QEN71_RS07840at 1738.789 kb on - strand, within QEN71_RS07840at 1738.797 kb on - strand, within QEN71_RS07840at 1738.797 kb on - strand, within QEN71_RS07840at 1738.797 kb on - strand, within QEN71_RS07840at 1739.056 kb on + strand, within QEN71_RS07845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
remove
1,737,164 - -2.9
1,737,164 - -2.4
1,737,164 - -2.5
1,737,164 - -0.4
1,737,291 + QEN71_RS07830 0.66 +0.8
1,737,291 + QEN71_RS07830 0.66 -0.4
1,737,469 - +0.6
1,737,469 - -1.3
1,737,469 - -0.5
1,737,469 - -0.7
1,737,478 - +0.8
1,737,912 - +0.3
1,737,984 + QEN71_RS07835 0.27 +1.1
1,737,984 + QEN71_RS07835 0.27 -0.6
1,738,001 + QEN71_RS07835 0.36 +1.2
1,738,001 + QEN71_RS07835 0.36 +0.2
1,738,002 - QEN71_RS07835 0.37 +0.2
1,738,002 - QEN71_RS07835 0.37 -0.5
1,738,041 - QEN71_RS07835 0.57 +0.3
1,738,041 - QEN71_RS07835 0.57 -0.2
1,738,041 - QEN71_RS07835 0.57 +0.5
1,738,046 + QEN71_RS07835 0.60 +2.1
1,738,046 + QEN71_RS07835 0.60 -0.6
1,738,046 + QEN71_RS07835 0.60 +0.7
1,738,046 + QEN71_RS07835 0.60 -0.2
1,738,047 - QEN71_RS07835 0.60 +0.3
1,738,049 + QEN71_RS07835 0.61 -0.5
1,738,050 - QEN71_RS07835 0.62 -1.0
1,738,115 + +0.5
1,738,115 + -2.2
1,738,115 + -0.3
1,738,126 + +0.8
1,738,126 + +0.2
1,738,127 - -0.3
1,738,127 - -0.3
1,738,127 - -0.3
1,738,127 - -0.5
1,738,127 - -0.5
1,738,127 - -0.9
1,738,140 + -0.5
1,738,141 - -0.5
1,738,145 + -0.7
1,738,238 + QEN71_RS07840 0.11 -0.8
1,738,238 + QEN71_RS07840 0.11 -0.2
1,738,238 + QEN71_RS07840 0.11 +0.1
1,738,238 + QEN71_RS07840 0.11 -0.2
1,738,238 + QEN71_RS07840 0.11 +1.1
1,738,239 - QEN71_RS07840 0.11 -0.0
1,738,239 - QEN71_RS07840 0.11 -0.3
1,738,239 - QEN71_RS07840 0.11 +1.4
1,738,239 - QEN71_RS07840 0.11 +0.3
1,738,239 - QEN71_RS07840 0.11 +0.1
1,738,355 + QEN71_RS07840 0.26 -0.4
1,738,355 + QEN71_RS07840 0.26 -0.0
1,738,355 + QEN71_RS07840 0.26 -0.9
1,738,355 + QEN71_RS07840 0.26 -1.7
1,738,355 + QEN71_RS07840 0.26 -0.7
1,738,355 + QEN71_RS07840 0.26 -1.5
1,738,355 + QEN71_RS07840 0.26 -0.0
1,738,355 + QEN71_RS07840 0.26 +0.2
1,738,355 + QEN71_RS07840 0.26 +0.2
1,738,355 + QEN71_RS07840 0.26 +0.7
1,738,355 + QEN71_RS07840 0.26 -1.5
1,738,355 + QEN71_RS07840 0.26 +1.1
1,738,355 + QEN71_RS07840 0.26 +0.0
1,738,356 - QEN71_RS07840 0.26 +0.4
1,738,356 - QEN71_RS07840 0.26 -0.5
1,738,356 - QEN71_RS07840 0.26 +0.2
1,738,356 - QEN71_RS07840 0.26 -0.1
1,738,356 - QEN71_RS07840 0.26 +0.2
1,738,356 - QEN71_RS07840 0.26 -0.3
1,738,372 - QEN71_RS07840 0.28 -0.7
1,738,478 + QEN71_RS07840 0.42 -0.2
1,738,478 + QEN71_RS07840 0.42 +0.3
1,738,479 - QEN71_RS07840 0.42 +0.1
1,738,479 - QEN71_RS07840 0.42 -0.7
1,738,496 + QEN71_RS07840 0.44 -0.1
1,738,497 - QEN71_RS07840 0.44 -0.2
1,738,497 - QEN71_RS07840 0.44 +0.4
1,738,576 - QEN71_RS07840 0.54 -0.2
1,738,576 - QEN71_RS07840 0.54 -1.2
1,738,788 + QEN71_RS07840 0.81 +0.5
1,738,788 + QEN71_RS07840 0.81 +0.1
1,738,788 + QEN71_RS07840 0.81 +0.2
1,738,788 + QEN71_RS07840 0.81 -0.8
1,738,789 - QEN71_RS07840 0.82 -0.2
1,738,789 - QEN71_RS07840 0.82 -0.2
1,738,789 - QEN71_RS07840 0.82 +0.4
1,738,789 - QEN71_RS07840 0.82 -0.9
1,738,789 - QEN71_RS07840 0.82 +0.7
1,738,797 - QEN71_RS07840 0.83 +0.6
1,738,797 - QEN71_RS07840 0.83 -0.9
1,738,797 - QEN71_RS07840 0.83 -0.4
1,739,056 + QEN71_RS07845 0.11 +0.1

Or see this region's nucleotide sequence