Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05980 and QEN71_RS05985 are separated by 86 nucleotides QEN71_RS05985 and QEN71_RS05990 are separated by 68 nucleotides QEN71_RS05990 and QEN71_RS05995 are separated by 396 nucleotides
QEN71_RS05980: QEN71_RS05980 - histidine--tRNA ligase, at 1,325,283 to 1,326,623
_RS05980
QEN71_RS05985: QEN71_RS05985 - tetratricopeptide repeat protein, at 1,326,710 to 1,327,336
_RS05985
QEN71_RS05990: QEN71_RS05990 - outer membrane protein assembly factor BamB, at 1,327,405 to 1,328,550
_RS05990
QEN71_RS05995: QEN71_RS05995 - ribosome biogenesis GTPase Der, at 1,328,947 to 1,330,287
_RS05995
Position (kb)
1327
1328
1329 Strain fitness (log2 ratio)
-1
0
1
2 at 1326.580 kb on + strand at 1326.580 kb on + strand at 1326.580 kb on + strand at 1326.678 kb on + strand at 1326.678 kb on + strand at 1326.678 kb on + strand at 1326.678 kb on + strand at 1326.678 kb on + strand at 1326.681 kb on + strand at 1326.681 kb on + strand at 1326.681 kb on + strand at 1326.716 kb on + strand at 1326.716 kb on + strand at 1326.836 kb on + strand, within QEN71_RS05985 at 1326.875 kb on + strand, within QEN71_RS05985 at 1326.875 kb on + strand, within QEN71_RS05985 at 1326.875 kb on + strand, within QEN71_RS05985 at 1326.875 kb on + strand, within QEN71_RS05985 at 1326.875 kb on + strand, within QEN71_RS05985 at 1327.007 kb on + strand, within QEN71_RS05985 at 1327.007 kb on + strand, within QEN71_RS05985 at 1327.007 kb on + strand, within QEN71_RS05985 at 1327.007 kb on + strand, within QEN71_RS05985 at 1327.007 kb on + strand, within QEN71_RS05985 at 1327.007 kb on + strand, within QEN71_RS05985 at 1327.250 kb on + strand, within QEN71_RS05985 at 1327.250 kb on + strand, within QEN71_RS05985 at 1327.250 kb on + strand, within QEN71_RS05985 at 1327.380 kb on + strand at 1327.380 kb on + strand at 1327.380 kb on + strand at 1327.380 kb on + strand at 1327.380 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1327.387 kb on + strand at 1328.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 1,326,580 + +0.2 1,326,580 + +0.7 1,326,580 + -0.8 1,326,678 + +0.3 1,326,678 + +0.8 1,326,678 + +1.8 1,326,678 + +0.5 1,326,678 + +0.4 1,326,681 + +0.3 1,326,681 + +1.4 1,326,681 + +1.4 1,326,716 + -0.0 1,326,716 + +0.9 1,326,836 + QEN71_RS05985 0.20 -0.3 1,326,875 + QEN71_RS05985 0.26 -0.2 1,326,875 + QEN71_RS05985 0.26 +1.0 1,326,875 + QEN71_RS05985 0.26 -0.5 1,326,875 + QEN71_RS05985 0.26 +1.8 1,326,875 + QEN71_RS05985 0.26 -1.0 1,327,007 + QEN71_RS05985 0.47 -1.7 1,327,007 + QEN71_RS05985 0.47 -0.6 1,327,007 + QEN71_RS05985 0.47 -1.2 1,327,007 + QEN71_RS05985 0.47 -1.6 1,327,007 + QEN71_RS05985 0.47 -0.5 1,327,007 + QEN71_RS05985 0.47 +1.0 1,327,250 + QEN71_RS05985 0.86 -0.8 1,327,250 + QEN71_RS05985 0.86 -1.0 1,327,250 + QEN71_RS05985 0.86 -0.2 1,327,380 + -0.5 1,327,380 + -1.5 1,327,380 + -0.1 1,327,380 + -0.8 1,327,380 + -0.2 1,327,387 + -0.8 1,327,387 + +0.1 1,327,387 + -0.5 1,327,387 + +0.4 1,327,387 + +0.1 1,327,387 + +0.5 1,327,387 + +0.5 1,327,387 + +1.1 1,327,387 + +0.6 1,327,387 + +0.7 1,327,387 + -0.2 1,327,387 + +0.5 1,327,387 + +0.7 1,327,387 + +0.1 1,327,387 + -0.8 1,327,387 + +0.6 1,327,387 + -1.2 1,328,851 + +0.1
Or see this region's nucleotide sequence