Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03195

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03190 and QEN71_RS03195 are separated by 166 nucleotidesQEN71_RS03195 and QEN71_RS03200 are separated by 93 nucleotides QEN71_RS03190: QEN71_RS03190 - amino acid permease, at 711,764 to 713,164 _RS03190 QEN71_RS03195: QEN71_RS03195 - tRNA-Leu, at 713,331 to 713,415 _RS03195 QEN71_RS03200: QEN71_RS03200 - oxygen-independent coproporphyrinogen III oxidase, at 713,509 to 714,912 _RS03200 Position (kb) 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 712.499 kb on + strand, within QEN71_RS03190at 712.517 kb on + strand, within QEN71_RS03190at 712.517 kb on + strand, within QEN71_RS03190at 712.517 kb on + strand, within QEN71_RS03190at 712.518 kb on - strand, within QEN71_RS03190at 712.518 kb on - strand, within QEN71_RS03190at 712.550 kb on + strand, within QEN71_RS03190at 712.550 kb on + strand, within QEN71_RS03190at 712.551 kb on - strand, within QEN71_RS03190at 712.551 kb on - strand, within QEN71_RS03190at 712.551 kb on - strand, within QEN71_RS03190at 712.551 kb on - strand, within QEN71_RS03190at 712.636 kb on + strand, within QEN71_RS03190at 712.636 kb on + strand, within QEN71_RS03190at 712.636 kb on + strand, within QEN71_RS03190at 712.637 kb on - strand, within QEN71_RS03190at 712.670 kb on + strand, within QEN71_RS03190at 712.670 kb on + strand, within QEN71_RS03190at 712.670 kb on + strand, within QEN71_RS03190at 712.670 kb on + strand, within QEN71_RS03190at 712.671 kb on - strand, within QEN71_RS03190at 712.671 kb on - strand, within QEN71_RS03190at 712.671 kb on - strand, within QEN71_RS03190at 712.671 kb on - strand, within QEN71_RS03190at 712.671 kb on - strand, within QEN71_RS03190at 712.685 kb on + strand, within QEN71_RS03190at 712.685 kb on + strand, within QEN71_RS03190at 712.686 kb on - strand, within QEN71_RS03190at 712.686 kb on - strand, within QEN71_RS03190at 712.686 kb on - strand, within QEN71_RS03190at 712.694 kb on - strand, within QEN71_RS03190at 712.694 kb on - strand, within QEN71_RS03190at 712.706 kb on + strand, within QEN71_RS03190at 712.706 kb on + strand, within QEN71_RS03190at 712.707 kb on - strand, within QEN71_RS03190at 712.707 kb on - strand, within QEN71_RS03190at 712.707 kb on - strand, within QEN71_RS03190at 712.707 kb on - strand, within QEN71_RS03190at 712.746 kb on + strand, within QEN71_RS03190at 712.746 kb on + strand, within QEN71_RS03190at 712.746 kb on + strand, within QEN71_RS03190at 712.746 kb on + strand, within QEN71_RS03190at 712.747 kb on - strand, within QEN71_RS03190at 712.747 kb on - strand, within QEN71_RS03190at 712.747 kb on - strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.772 kb on + strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.773 kb on - strand, within QEN71_RS03190at 712.774 kb on + strand, within QEN71_RS03190at 712.774 kb on + strand, within QEN71_RS03190at 712.775 kb on - strand, within QEN71_RS03190at 712.826 kb on + strand, within QEN71_RS03190at 712.826 kb on + strand, within QEN71_RS03190at 712.826 kb on + strand, within QEN71_RS03190at 712.826 kb on + strand, within QEN71_RS03190at 712.827 kb on - strand, within QEN71_RS03190at 713.102 kb on + strandat 713.102 kb on + strandat 713.103 kb on - strandat 713.103 kb on - strandat 713.510 kb on + strandat 713.511 kb on - strandat 713.511 kb on - strandat 713.552 kb on + strandat 713.791 kb on + strand, within QEN71_RS03200at 713.792 kb on - strand, within QEN71_RS03200at 713.873 kb on + strand, within QEN71_RS03200at 713.873 kb on + strand, within QEN71_RS03200at 713.873 kb on + strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.874 kb on - strand, within QEN71_RS03200at 713.942 kb on + strand, within QEN71_RS03200at 713.942 kb on + strand, within QEN71_RS03200at 714.027 kb on + strand, within QEN71_RS03200at 714.027 kb on + strand, within QEN71_RS03200at 714.027 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.029 kb on + strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.030 kb on - strand, within QEN71_RS03200at 714.035 kb on + strand, within QEN71_RS03200at 714.036 kb on - strand, within QEN71_RS03200at 714.036 kb on - strand, within QEN71_RS03200at 714.036 kb on - strand, within QEN71_RS03200at 714.036 kb on - strand, within QEN71_RS03200at 714.036 kb on - strand, within QEN71_RS03200at 714.198 kb on + strand, within QEN71_RS03200at 714.199 kb on - strand, within QEN71_RS03200at 714.245 kb on + strand, within QEN71_RS03200at 714.245 kb on + strand, within QEN71_RS03200at 714.245 kb on + strand, within QEN71_RS03200at 714.246 kb on - strand, within QEN71_RS03200at 714.246 kb on - strand, within QEN71_RS03200at 714.246 kb on - strand, within QEN71_RS03200at 714.246 kb on - strand, within QEN71_RS03200at 714.298 kb on + strand, within QEN71_RS03200at 714.299 kb on - strand, within QEN71_RS03200at 714.299 kb on - strand, within QEN71_RS03200

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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712,499 + QEN71_RS03190 0.52 -0.6
712,517 + QEN71_RS03190 0.54 -0.7
712,517 + QEN71_RS03190 0.54 +1.1
712,517 + QEN71_RS03190 0.54 +0.7
712,518 - QEN71_RS03190 0.54 -0.5
712,518 - QEN71_RS03190 0.54 +1.3
712,550 + QEN71_RS03190 0.56 -2.4
712,550 + QEN71_RS03190 0.56 -1.1
712,551 - QEN71_RS03190 0.56 -0.8
712,551 - QEN71_RS03190 0.56 -0.1
712,551 - QEN71_RS03190 0.56 -0.5
712,551 - QEN71_RS03190 0.56 -0.6
712,636 + QEN71_RS03190 0.62 -1.8
712,636 + QEN71_RS03190 0.62 -0.5
712,636 + QEN71_RS03190 0.62 -0.5
712,637 - QEN71_RS03190 0.62 +2.0
712,670 + QEN71_RS03190 0.65 -0.4
712,670 + QEN71_RS03190 0.65 +0.2
712,670 + QEN71_RS03190 0.65 -0.8
712,670 + QEN71_RS03190 0.65 +0.4
712,671 - QEN71_RS03190 0.65 +0.0
712,671 - QEN71_RS03190 0.65 -0.3
712,671 - QEN71_RS03190 0.65 -0.4
712,671 - QEN71_RS03190 0.65 +1.1
712,671 - QEN71_RS03190 0.65 +0.1
712,685 + QEN71_RS03190 0.66 +0.3
712,685 + QEN71_RS03190 0.66 -0.3
712,686 - QEN71_RS03190 0.66 -0.5
712,686 - QEN71_RS03190 0.66 +0.2
712,686 - QEN71_RS03190 0.66 -0.7
712,694 - QEN71_RS03190 0.66 +0.4
712,694 - QEN71_RS03190 0.66 +0.6
712,706 + QEN71_RS03190 0.67 +1.0
712,706 + QEN71_RS03190 0.67 -0.9
712,707 - QEN71_RS03190 0.67 -0.7
712,707 - QEN71_RS03190 0.67 +0.3
712,707 - QEN71_RS03190 0.67 +0.3
712,707 - QEN71_RS03190 0.67 +0.1
712,746 + QEN71_RS03190 0.70 +0.4
712,746 + QEN71_RS03190 0.70 +0.3
712,746 + QEN71_RS03190 0.70 -2.0
712,746 + QEN71_RS03190 0.70 -1.3
712,747 - QEN71_RS03190 0.70 -0.2
712,747 - QEN71_RS03190 0.70 -0.6
712,747 - QEN71_RS03190 0.70 -0.4
712,772 + QEN71_RS03190 0.72 +1.2
712,772 + QEN71_RS03190 0.72 -0.9
712,772 + QEN71_RS03190 0.72 -2.3
712,772 + QEN71_RS03190 0.72 +0.3
712,772 + QEN71_RS03190 0.72 -0.2
712,772 + QEN71_RS03190 0.72 +0.7
712,772 + QEN71_RS03190 0.72 +0.2
712,773 - QEN71_RS03190 0.72 -0.5
712,773 - QEN71_RS03190 0.72 -0.4
712,773 - QEN71_RS03190 0.72 -0.1
712,773 - QEN71_RS03190 0.72 +0.7
712,773 - QEN71_RS03190 0.72 +0.3
712,773 - QEN71_RS03190 0.72 -0.1
712,773 - QEN71_RS03190 0.72 +0.3
712,774 + QEN71_RS03190 0.72 -0.8
712,774 + QEN71_RS03190 0.72 -1.6
712,775 - QEN71_RS03190 0.72 -0.1
712,826 + QEN71_RS03190 0.76 +0.0
712,826 + QEN71_RS03190 0.76 +0.7
712,826 + QEN71_RS03190 0.76 +0.8
712,826 + QEN71_RS03190 0.76 -0.4
712,827 - QEN71_RS03190 0.76 -0.6
713,102 + +0.5
713,102 + +0.5
713,103 - -0.7
713,103 - -0.7
713,510 + +0.1
713,511 - +1.0
713,511 - +1.5
713,552 + -0.4
713,791 + QEN71_RS03200 0.20 -0.5
713,792 - QEN71_RS03200 0.20 +1.4
713,873 + QEN71_RS03200 0.26 +0.3
713,873 + QEN71_RS03200 0.26 -0.3
713,873 + QEN71_RS03200 0.26 +0.0
713,874 - QEN71_RS03200 0.26 -1.4
713,874 - QEN71_RS03200 0.26 -0.4
713,874 - QEN71_RS03200 0.26 -0.8
713,874 - QEN71_RS03200 0.26 -0.2
713,874 - QEN71_RS03200 0.26 -0.0
713,874 - QEN71_RS03200 0.26 -0.5
713,874 - QEN71_RS03200 0.26 -1.6
713,942 + QEN71_RS03200 0.31 -1.5
713,942 + QEN71_RS03200 0.31 +0.2
714,027 + QEN71_RS03200 0.37 -1.2
714,027 + QEN71_RS03200 0.37 +0.1
714,027 + QEN71_RS03200 0.37 +1.6
714,029 + QEN71_RS03200 0.37 -0.8
714,029 + QEN71_RS03200 0.37 -0.5
714,029 + QEN71_RS03200 0.37 -0.7
714,029 + QEN71_RS03200 0.37 -0.8
714,029 + QEN71_RS03200 0.37 +0.5
714,029 + QEN71_RS03200 0.37 +0.3
714,029 + QEN71_RS03200 0.37 -0.5
714,029 + QEN71_RS03200 0.37 -0.5
714,029 + QEN71_RS03200 0.37 -0.5
714,029 + QEN71_RS03200 0.37 +0.1
714,029 + QEN71_RS03200 0.37 -1.1
714,029 + QEN71_RS03200 0.37 +0.4
714,029 + QEN71_RS03200 0.37 -0.3
714,030 - QEN71_RS03200 0.37 -0.5
714,030 - QEN71_RS03200 0.37 +0.2
714,030 - QEN71_RS03200 0.37 -1.3
714,030 - QEN71_RS03200 0.37 -1.0
714,030 - QEN71_RS03200 0.37 -1.1
714,030 - QEN71_RS03200 0.37 +1.3
714,030 - QEN71_RS03200 0.37 +0.1
714,030 - QEN71_RS03200 0.37 -2.1
714,030 - QEN71_RS03200 0.37 -1.6
714,030 - QEN71_RS03200 0.37 +0.9
714,030 - QEN71_RS03200 0.37 -0.5
714,030 - QEN71_RS03200 0.37 +0.7
714,030 - QEN71_RS03200 0.37 +0.1
714,030 - QEN71_RS03200 0.37 +0.2
714,030 - QEN71_RS03200 0.37 -0.2
714,030 - QEN71_RS03200 0.37 +0.5
714,030 - QEN71_RS03200 0.37 -0.6
714,030 - QEN71_RS03200 0.37 -0.3
714,030 - QEN71_RS03200 0.37 +0.5
714,030 - QEN71_RS03200 0.37 -1.0
714,030 - QEN71_RS03200 0.37 -0.1
714,030 - QEN71_RS03200 0.37 +0.1
714,030 - QEN71_RS03200 0.37 -0.6
714,030 - QEN71_RS03200 0.37 +1.1
714,030 - QEN71_RS03200 0.37 -0.5
714,030 - QEN71_RS03200 0.37 +0.2
714,030 - QEN71_RS03200 0.37 -0.8
714,030 - QEN71_RS03200 0.37 -0.3
714,035 + QEN71_RS03200 0.37 +1.1
714,036 - QEN71_RS03200 0.38 +0.5
714,036 - QEN71_RS03200 0.38 +0.2
714,036 - QEN71_RS03200 0.38 -1.5
714,036 - QEN71_RS03200 0.38 -0.6
714,036 - QEN71_RS03200 0.38 -2.7
714,198 + QEN71_RS03200 0.49 -0.5
714,199 - QEN71_RS03200 0.49 +1.0
714,245 + QEN71_RS03200 0.52 +1.1
714,245 + QEN71_RS03200 0.52 -0.5
714,245 + QEN71_RS03200 0.52 -1.0
714,246 - QEN71_RS03200 0.52 +0.6
714,246 - QEN71_RS03200 0.52 -0.7
714,246 - QEN71_RS03200 0.52 -0.8
714,246 - QEN71_RS03200 0.52 -0.5
714,298 + QEN71_RS03200 0.56 -2.9
714,299 - QEN71_RS03200 0.56 -0.5
714,299 - QEN71_RS03200 0.56 -0.6

Or see this region's nucleotide sequence