Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02615

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02610 and QEN71_RS02615 are separated by 252 nucleotidesQEN71_RS02615 and QEN71_RS02620 overlap by 6 nucleotides QEN71_RS02610: QEN71_RS02610 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 584,143 to 585,252 _RS02610 QEN71_RS02615: QEN71_RS02615 - tetratricopeptide repeat protein, at 585,505 to 587,286 _RS02615 QEN71_RS02620: QEN71_RS02620 - sugar-binding transcriptional regulator, at 587,281 to 588,252 _RS02620 Position (kb) 585 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.807 kb on - strand, within QEN71_RS02610at 584.807 kb on - strand, within QEN71_RS02610at 584.807 kb on - strand, within QEN71_RS02610at 585.025 kb on + strand, within QEN71_RS02610at 585.026 kb on - strand, within QEN71_RS02610at 585.076 kb on + strand, within QEN71_RS02610at 585.077 kb on - strand, within QEN71_RS02610at 585.077 kb on - strand, within QEN71_RS02610at 585.083 kb on - strand, within QEN71_RS02610at 585.311 kb on + strandat 585.312 kb on - strandat 585.312 kb on - strandat 585.335 kb on + strandat 585.348 kb on + strandat 585.525 kb on + strandat 585.525 kb on + strandat 585.526 kb on - strandat 585.526 kb on - strandat 585.526 kb on - strandat 585.526 kb on - strandat 585.658 kb on + strandat 585.658 kb on + strandat 585.658 kb on + strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.677 kb on - strandat 585.677 kb on - strandat 586.022 kb on - strand, within QEN71_RS02615at 586.022 kb on - strand, within QEN71_RS02615at 586.053 kb on + strand, within QEN71_RS02615at 586.053 kb on + strand, within QEN71_RS02615at 586.053 kb on + strand, within QEN71_RS02615at 586.054 kb on - strand, within QEN71_RS02615at 586.120 kb on + strand, within QEN71_RS02615at 586.120 kb on + strand, within QEN71_RS02615at 586.121 kb on - strand, within QEN71_RS02615at 586.226 kb on - strand, within QEN71_RS02615at 586.226 kb on - strand, within QEN71_RS02615at 586.226 kb on - strand, within QEN71_RS02615at 586.269 kb on + strand, within QEN71_RS02615at 586.269 kb on + strand, within QEN71_RS02615at 586.270 kb on - strand, within QEN71_RS02615at 586.306 kb on + strand, within QEN71_RS02615at 586.358 kb on + strand, within QEN71_RS02615at 586.358 kb on + strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.370 kb on - strand, within QEN71_RS02615at 586.370 kb on - strand, within QEN71_RS02615at 586.383 kb on + strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.427 kb on - strand, within QEN71_RS02615at 586.427 kb on - strand, within QEN71_RS02615at 586.427 kb on - strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.662 kb on - strand, within QEN71_RS02615at 586.662 kb on - strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.705 kb on + strand, within QEN71_RS02615at 586.705 kb on + strand, within QEN71_RS02615at 586.706 kb on - strand, within QEN71_RS02615at 586.706 kb on - strand, within QEN71_RS02615at 586.706 kb on - strand, within QEN71_RS02615at 586.768 kb on + strand, within QEN71_RS02615at 586.768 kb on + strand, within QEN71_RS02615at 586.768 kb on + strand, within QEN71_RS02615at 586.769 kb on - strand, within QEN71_RS02615at 586.769 kb on - strand, within QEN71_RS02615at 586.769 kb on - strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.888 kb on + strand, within QEN71_RS02615at 586.888 kb on + strand, within QEN71_RS02615at 586.889 kb on - strand, within QEN71_RS02615at 587.083 kb on - strand, within QEN71_RS02615at 587.083 kb on - strand, within QEN71_RS02615at 587.091 kb on + strand, within QEN71_RS02615at 587.091 kb on + strand, within QEN71_RS02615at 587.091 kb on + strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.229 kb on - strandat 587.282 kb on + strandat 587.282 kb on + strandat 587.282 kb on + strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.284 kb on + strandat 587.284 kb on + strandat 587.285 kb on - strandat 587.285 kb on - strandat 587.285 kb on - strandat 587.285 kb on - strandat 587.611 kb on - strand, within QEN71_RS02620at 587.784 kb on - strand, within QEN71_RS02620at 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.198 kb on - strandat 588.198 kb on - strandat 588.200 kb on + strandat 588.201 kb on - strandat 588.201 kb on - strandat 588.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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584,708 - QEN71_RS02610 0.51 -0.3
584,708 - QEN71_RS02610 0.51 -0.3
584,708 - QEN71_RS02610 0.51 -1.6
584,708 - QEN71_RS02610 0.51 -0.5
584,708 - QEN71_RS02610 0.51 +0.8
584,708 - QEN71_RS02610 0.51 -0.4
584,806 + QEN71_RS02610 0.60 -1.1
584,806 + QEN71_RS02610 0.60 +0.2
584,806 + QEN71_RS02610 0.60 -0.1
584,806 + QEN71_RS02610 0.60 +0.4
584,806 + QEN71_RS02610 0.60 -0.4
584,806 + QEN71_RS02610 0.60 +0.9
584,807 - QEN71_RS02610 0.60 +0.6
584,807 - QEN71_RS02610 0.60 -1.3
584,807 - QEN71_RS02610 0.60 -1.0
585,025 + QEN71_RS02610 0.79 -1.5
585,026 - QEN71_RS02610 0.80 +1.1
585,076 + QEN71_RS02610 0.84 -1.5
585,077 - QEN71_RS02610 0.84 +1.4
585,077 - QEN71_RS02610 0.84 +0.3
585,083 - QEN71_RS02610 0.85 -0.3
585,311 + -0.6
585,312 - -0.3
585,312 - +0.4
585,335 + -1.2
585,348 + +0.2
585,525 + +0.2
585,525 + -1.1
585,526 - -1.7
585,526 - -0.3
585,526 - -0.1
585,526 - -0.3
585,658 + -0.2
585,658 + +0.2
585,658 + -0.6
585,659 - -1.0
585,659 - -0.2
585,659 - -0.5
585,659 - -0.2
585,659 - -0.4
585,659 - -1.5
585,659 - +1.1
585,676 + -1.5
585,676 + -0.5
585,676 + +1.0
585,676 + -0.2
585,676 + -0.2
585,677 - +0.7
585,677 - -1.0
586,022 - QEN71_RS02615 0.29 -0.2
586,022 - QEN71_RS02615 0.29 +0.3
586,053 + QEN71_RS02615 0.31 -0.6
586,053 + QEN71_RS02615 0.31 -0.3
586,053 + QEN71_RS02615 0.31 -0.2
586,054 - QEN71_RS02615 0.31 -0.8
586,120 + QEN71_RS02615 0.35 -0.5
586,120 + QEN71_RS02615 0.35 -0.3
586,121 - QEN71_RS02615 0.35 -0.5
586,226 - QEN71_RS02615 0.40 +0.6
586,226 - QEN71_RS02615 0.40 -0.6
586,226 - QEN71_RS02615 0.40 +1.2
586,269 + QEN71_RS02615 0.43 +0.5
586,269 + QEN71_RS02615 0.43 -1.0
586,270 - QEN71_RS02615 0.43 -0.8
586,306 + QEN71_RS02615 0.45 -0.1
586,358 + QEN71_RS02615 0.48 -0.2
586,358 + QEN71_RS02615 0.48 -0.3
586,359 - QEN71_RS02615 0.48 -1.1
586,359 - QEN71_RS02615 0.48 -0.3
586,359 - QEN71_RS02615 0.48 -0.2
586,359 - QEN71_RS02615 0.48 -1.0
586,369 + QEN71_RS02615 0.48 -0.0
586,369 + QEN71_RS02615 0.48 -0.2
586,369 + QEN71_RS02615 0.48 -0.3
586,369 + QEN71_RS02615 0.48 +0.6
586,369 + QEN71_RS02615 0.48 +0.5
586,369 + QEN71_RS02615 0.48 -0.0
586,369 + QEN71_RS02615 0.48 -0.8
586,370 - QEN71_RS02615 0.49 -0.9
586,370 - QEN71_RS02615 0.49 -0.3
586,383 + QEN71_RS02615 0.49 -0.7
586,384 - QEN71_RS02615 0.49 +0.1
586,384 - QEN71_RS02615 0.49 -0.2
586,384 - QEN71_RS02615 0.49 +0.7
586,384 - QEN71_RS02615 0.49 -0.8
586,384 - QEN71_RS02615 0.49 -1.2
586,384 - QEN71_RS02615 0.49 -0.0
586,384 - QEN71_RS02615 0.49 +0.3
586,426 + QEN71_RS02615 0.52 +0.8
586,426 + QEN71_RS02615 0.52 -1.2
586,426 + QEN71_RS02615 0.52 +0.0
586,426 + QEN71_RS02615 0.52 -1.1
586,427 - QEN71_RS02615 0.52 -0.0
586,427 - QEN71_RS02615 0.52 -0.2
586,427 - QEN71_RS02615 0.52 -0.5
586,429 + QEN71_RS02615 0.52 -2.8
586,429 + QEN71_RS02615 0.52 -0.8
586,429 + QEN71_RS02615 0.52 -1.0
586,429 + QEN71_RS02615 0.52 -0.3
586,429 + QEN71_RS02615 0.52 +0.3
586,429 + QEN71_RS02615 0.52 -1.3
586,429 + QEN71_RS02615 0.52 +0.2
586,430 - QEN71_RS02615 0.52 +1.5
586,430 - QEN71_RS02615 0.52 +0.6
586,430 - QEN71_RS02615 0.52 +0.8
586,430 - QEN71_RS02615 0.52 -0.6
586,430 - QEN71_RS02615 0.52 +0.5
586,430 - QEN71_RS02615 0.52 +1.0
586,662 - QEN71_RS02615 0.65 +0.1
586,662 - QEN71_RS02615 0.65 -1.3
586,702 + QEN71_RS02615 0.67 +0.1
586,702 + QEN71_RS02615 0.67 -0.9
586,702 + QEN71_RS02615 0.67 +0.8
586,702 + QEN71_RS02615 0.67 -0.3
586,702 + QEN71_RS02615 0.67 -0.6
586,703 - QEN71_RS02615 0.67 +0.1
586,703 - QEN71_RS02615 0.67 +0.1
586,703 - QEN71_RS02615 0.67 -0.5
586,703 - QEN71_RS02615 0.67 -2.2
586,703 - QEN71_RS02615 0.67 +0.0
586,703 - QEN71_RS02615 0.67 -0.4
586,703 - QEN71_RS02615 0.67 -0.8
586,703 - QEN71_RS02615 0.67 -1.0
586,705 + QEN71_RS02615 0.67 -0.0
586,705 + QEN71_RS02615 0.67 -0.1
586,706 - QEN71_RS02615 0.67 -0.2
586,706 - QEN71_RS02615 0.67 +0.4
586,706 - QEN71_RS02615 0.67 -0.9
586,768 + QEN71_RS02615 0.71 -0.3
586,768 + QEN71_RS02615 0.71 +0.5
586,768 + QEN71_RS02615 0.71 -1.8
586,769 - QEN71_RS02615 0.71 +0.0
586,769 - QEN71_RS02615 0.71 +0.2
586,769 - QEN71_RS02615 0.71 -0.2
586,876 + QEN71_RS02615 0.77 -0.2
586,876 + QEN71_RS02615 0.77 -0.8
586,876 + QEN71_RS02615 0.77 -0.2
586,876 + QEN71_RS02615 0.77 +0.5
586,877 - QEN71_RS02615 0.77 -0.7
586,877 - QEN71_RS02615 0.77 +0.5
586,877 - QEN71_RS02615 0.77 +0.0
586,877 - QEN71_RS02615 0.77 -1.1
586,877 - QEN71_RS02615 0.77 -0.5
586,888 + QEN71_RS02615 0.78 -0.2
586,888 + QEN71_RS02615 0.78 -1.9
586,889 - QEN71_RS02615 0.78 +0.4
587,083 - QEN71_RS02615 0.89 -0.0
587,083 - QEN71_RS02615 0.89 -0.2
587,091 + QEN71_RS02615 0.89 -1.3
587,091 + QEN71_RS02615 0.89 +2.1
587,091 + QEN71_RS02615 0.89 +0.3
587,092 - QEN71_RS02615 0.89 +0.8
587,092 - QEN71_RS02615 0.89 -1.3
587,092 - QEN71_RS02615 0.89 -0.0
587,092 - QEN71_RS02615 0.89 +0.3
587,229 - +0.4
587,282 + -1.0
587,282 + +0.2
587,282 + -0.5
587,283 - -2.5
587,283 - -1.0
587,283 - -0.3
587,283 - +0.2
587,283 - -0.5
587,283 - -0.3
587,283 - +0.0
587,283 - -0.3
587,284 + -0.8
587,284 + +1.7
587,285 - +0.1
587,285 - -0.6
587,285 - -0.6
587,285 - -0.1
587,611 - QEN71_RS02620 0.34 +0.1
587,784 - QEN71_RS02620 0.52 -0.1
588,197 + +0.2
588,197 + +0.2
588,197 + -0.3
588,197 + +0.8
588,197 + -1.1
588,197 + -0.5
588,198 - +0.2
588,198 - +0.2
588,200 + -2.1
588,201 - -1.2
588,201 - -1.8
588,201 - -2.5

Or see this region's nucleotide sequence