Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01975

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01970 and QEN71_RS01975 are separated by 202 nucleotidesQEN71_RS01975 and QEN71_RS01980 overlap by 4 nucleotidesQEN71_RS01980 and QEN71_RS01985 are separated by 9 nucleotides QEN71_RS01970: QEN71_RS01970 - IS481 family transposase, at 434,918 to 436,057 _RS01970 QEN71_RS01975: QEN71_RS01975 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 436,260 to 437,084 _RS01975 QEN71_RS01980: QEN71_RS01980 - 5'-nucleotidase, at 437,081 to 437,983 _RS01980 QEN71_RS01985: QEN71_RS01985 - threonine ammonia-lyase, biosynthetic, at 437,993 to 439,516 _RS01985 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 436.182 kb on + strandat 436.261 kb on + strandat 436.261 kb on + strandat 436.261 kb on + strandat 436.284 kb on - strandat 436.301 kb on + strandat 436.325 kb on + strandat 436.325 kb on + strandat 436.348 kb on + strand, within QEN71_RS01975at 436.357 kb on + strand, within QEN71_RS01975at 436.357 kb on + strand, within QEN71_RS01975at 436.357 kb on + strand, within QEN71_RS01975at 436.358 kb on - strand, within QEN71_RS01975at 436.371 kb on - strand, within QEN71_RS01975at 436.454 kb on + strand, within QEN71_RS01975at 436.454 kb on + strand, within QEN71_RS01975at 436.454 kb on + strand, within QEN71_RS01975at 436.455 kb on - strand, within QEN71_RS01975at 436.455 kb on - strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.499 kb on - strand, within QEN71_RS01975at 436.499 kb on - strand, within QEN71_RS01975at 436.499 kb on - strand, within QEN71_RS01975at 436.553 kb on + strand, within QEN71_RS01975at 436.553 kb on + strand, within QEN71_RS01975at 436.553 kb on + strand, within QEN71_RS01975at 436.554 kb on - strand, within QEN71_RS01975at 436.554 kb on - strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.822 kb on + strand, within QEN71_RS01975at 436.822 kb on + strand, within QEN71_RS01975at 436.823 kb on - strand, within QEN71_RS01975at 436.850 kb on + strand, within QEN71_RS01975at 436.850 kb on + strand, within QEN71_RS01975at 436.851 kb on - strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 437.032 kb on + strandat 437.032 kb on + strandat 437.032 kb on + strandat 437.033 kb on - strandat 437.033 kb on - strandat 437.044 kb on + strandat 437.044 kb on + strandat 437.045 kb on - strandat 437.045 kb on - strandat 437.444 kb on + strand, within QEN71_RS01980at 437.445 kb on - strand, within QEN71_RS01980at 437.486 kb on + strand, within QEN71_RS01980at 437.486 kb on + strand, within QEN71_RS01980at 437.487 kb on - strand, within QEN71_RS01980at 437.487 kb on - strand, within QEN71_RS01980at 437.529 kb on + strand, within QEN71_RS01980at 437.530 kb on - strand, within QEN71_RS01980at 437.533 kb on + strand, within QEN71_RS01980at 437.533 kb on + strand, within QEN71_RS01980at 437.533 kb on + strand, within QEN71_RS01980at 437.533 kb on + strand, within QEN71_RS01980at 437.652 kb on + strand, within QEN71_RS01980at 437.652 kb on + strand, within QEN71_RS01980at 437.652 kb on + strand, within QEN71_RS01980at 437.653 kb on - strand, within QEN71_RS01980at 437.653 kb on - strand, within QEN71_RS01980at 437.791 kb on + strand, within QEN71_RS01980at 437.792 kb on - strand, within QEN71_RS01980at 437.877 kb on + strand, within QEN71_RS01980at 437.878 kb on - strand, within QEN71_RS01980at 437.901 kb on + strandat 437.901 kb on + strandat 437.901 kb on + strandat 437.902 kb on - strandat 437.902 kb on - strandat 437.902 kb on - strandat 437.991 kb on + strandat 437.991 kb on + strandat 437.991 kb on + strandat 437.991 kb on + strandat 437.991 kb on + strandat 437.991 kb on + strandat 437.992 kb on - strandat 437.992 kb on - strandat 437.992 kb on - strandat 437.995 kb on - strandat 438.012 kb on + strandat 438.013 kb on - strandat 438.039 kb on + strandat 438.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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436,182 + +0.2
436,261 + +1.2
436,261 + -0.7
436,261 + +0.7
436,284 - -1.7
436,301 + +0.5
436,325 + -0.0
436,325 + -0.8
436,348 + QEN71_RS01975 0.11 -2.5
436,357 + QEN71_RS01975 0.12 +1.9
436,357 + QEN71_RS01975 0.12 -1.5
436,357 + QEN71_RS01975 0.12 -0.7
436,358 - QEN71_RS01975 0.12 +1.9
436,371 - QEN71_RS01975 0.13 +0.8
436,454 + QEN71_RS01975 0.24 -0.3
436,454 + QEN71_RS01975 0.24 +0.6
436,454 + QEN71_RS01975 0.24 -0.5
436,455 - QEN71_RS01975 0.24 -1.3
436,455 - QEN71_RS01975 0.24 -0.2
436,459 + QEN71_RS01975 0.24 -2.1
436,459 + QEN71_RS01975 0.24 +0.3
436,459 + QEN71_RS01975 0.24 +0.1
436,459 + QEN71_RS01975 0.24 -0.8
436,459 + QEN71_RS01975 0.24 +0.5
436,460 - QEN71_RS01975 0.24 -0.9
436,460 - QEN71_RS01975 0.24 -0.3
436,460 - QEN71_RS01975 0.24 +0.8
436,460 - QEN71_RS01975 0.24 +0.0
436,498 + QEN71_RS01975 0.29 +1.3
436,498 + QEN71_RS01975 0.29 -2.2
436,498 + QEN71_RS01975 0.29 -2.5
436,498 + QEN71_RS01975 0.29 -2.7
436,498 + QEN71_RS01975 0.29 -1.5
436,498 + QEN71_RS01975 0.29 -0.7
436,499 - QEN71_RS01975 0.29 +0.3
436,499 - QEN71_RS01975 0.29 -0.4
436,499 - QEN71_RS01975 0.29 -0.1
436,553 + QEN71_RS01975 0.36 +0.1
436,553 + QEN71_RS01975 0.36 -0.3
436,553 + QEN71_RS01975 0.36 -1.5
436,554 - QEN71_RS01975 0.36 -0.4
436,554 - QEN71_RS01975 0.36 -0.4
436,630 + QEN71_RS01975 0.45 -0.7
436,630 + QEN71_RS01975 0.45 -0.2
436,630 + QEN71_RS01975 0.45 -0.1
436,630 + QEN71_RS01975 0.45 -0.8
436,630 + QEN71_RS01975 0.45 -0.7
436,631 - QEN71_RS01975 0.45 -0.7
436,631 - QEN71_RS01975 0.45 +0.2
436,631 - QEN71_RS01975 0.45 -0.5
436,631 - QEN71_RS01975 0.45 -1.1
436,631 - QEN71_RS01975 0.45 -0.1
436,631 - QEN71_RS01975 0.45 -0.3
436,631 - QEN71_RS01975 0.45 +0.4
436,631 - QEN71_RS01975 0.45 -0.5
436,631 - QEN71_RS01975 0.45 +0.9
436,822 + QEN71_RS01975 0.68 -1.7
436,822 + QEN71_RS01975 0.68 +1.5
436,823 - QEN71_RS01975 0.68 -2.2
436,850 + QEN71_RS01975 0.72 -0.9
436,850 + QEN71_RS01975 0.72 -0.6
436,851 - QEN71_RS01975 0.72 -1.2
436,873 + QEN71_RS01975 0.74 -0.7
436,873 + QEN71_RS01975 0.74 -1.3
436,873 + QEN71_RS01975 0.74 -0.9
436,873 + QEN71_RS01975 0.74 -0.0
436,873 + QEN71_RS01975 0.74 -0.3
436,874 - QEN71_RS01975 0.74 +0.1
436,874 - QEN71_RS01975 0.74 -0.7
436,874 - QEN71_RS01975 0.74 +0.5
436,874 - QEN71_RS01975 0.74 -2.5
436,930 + QEN71_RS01975 0.81 -2.2
436,930 + QEN71_RS01975 0.81 -0.1
436,930 + QEN71_RS01975 0.81 -1.9
436,930 + QEN71_RS01975 0.81 -1.1
437,032 + -2.2
437,032 + -0.5
437,032 + +0.7
437,033 - -0.7
437,033 - +0.6
437,044 + +0.9
437,044 + -0.6
437,045 - +0.8
437,045 - -0.4
437,444 + QEN71_RS01980 0.40 +0.1
437,445 - QEN71_RS01980 0.40 -0.9
437,486 + QEN71_RS01980 0.45 -0.4
437,486 + QEN71_RS01980 0.45 -0.0
437,487 - QEN71_RS01980 0.45 +0.9
437,487 - QEN71_RS01980 0.45 -1.9
437,529 + QEN71_RS01980 0.50 -0.8
437,530 - QEN71_RS01980 0.50 -0.4
437,533 + QEN71_RS01980 0.50 +0.1
437,533 + QEN71_RS01980 0.50 +0.9
437,533 + QEN71_RS01980 0.50 +0.9
437,533 + QEN71_RS01980 0.50 +1.4
437,652 + QEN71_RS01980 0.63 +1.3
437,652 + QEN71_RS01980 0.63 -0.5
437,652 + QEN71_RS01980 0.63 +0.3
437,653 - QEN71_RS01980 0.63 +1.3
437,653 - QEN71_RS01980 0.63 +0.1
437,791 + QEN71_RS01980 0.79 +0.7
437,792 - QEN71_RS01980 0.79 -0.4
437,877 + QEN71_RS01980 0.88 +1.2
437,878 - QEN71_RS01980 0.88 -1.0
437,901 + -0.4
437,901 + -0.6
437,901 + -1.7
437,902 - -0.4
437,902 - +0.4
437,902 - -0.0
437,991 + +0.1
437,991 + -0.8
437,991 + -0.1
437,991 + -0.1
437,991 + +0.1
437,991 + +0.7
437,992 - -0.5
437,992 - -0.4
437,992 - -0.5
437,995 - -1.1
438,012 + -0.5
438,013 - -0.1
438,039 + -0.5
438,040 - +0.5

Or see this region's nucleotide sequence