Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00415 and QEN71_RS00420 are separated by 66 nucleotides QEN71_RS00420 and QEN71_RS00425 are separated by 435 nucleotides QEN71_RS00425 and QEN71_RS00430 are separated by 126 nucleotides
QEN71_RS00415: QEN71_RS00415 - efflux RND transporter periplasmic adaptor subunit, at 87,287 to 88,555
_RS00415
QEN71_RS00420: QEN71_RS00420 - efflux RND transporter permease subunit, at 88,622 to 91,804
_RS00420
QEN71_RS00425: QEN71_RS00425 - hypothetical protein, at 92,240 to 92,452
_RS00425
QEN71_RS00430: QEN71_RS00430 - serine/threonine protein kinase, at 92,579 to 93,601
_RS00430
Position (kb) 88
89
90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2 at 87.634 kb on - strand, within QEN71_RS00415 at 87.741 kb on + strand, within QEN71_RS00415 at 87.742 kb on - strand, within QEN71_RS00415 at 87.742 kb on - strand, within QEN71_RS00415 at 87.774 kb on + strand, within QEN71_RS00415 at 87.775 kb on - strand, within QEN71_RS00415 at 87.775 kb on - strand, within QEN71_RS00415 at 87.807 kb on + strand, within QEN71_RS00415 at 87.807 kb on + strand, within QEN71_RS00415 at 87.808 kb on - strand, within QEN71_RS00415 at 87.808 kb on - strand, within QEN71_RS00415 at 87.808 kb on - strand, within QEN71_RS00415 at 87.828 kb on + strand, within QEN71_RS00415 at 87.828 kb on + strand, within QEN71_RS00415 at 87.828 kb on + strand, within QEN71_RS00415 at 87.829 kb on - strand, within QEN71_RS00415 at 87.829 kb on - strand, within QEN71_RS00415 at 87.829 kb on - strand, within QEN71_RS00415 at 87.954 kb on + strand, within QEN71_RS00415 at 87.954 kb on + strand, within QEN71_RS00415 at 87.954 kb on + strand, within QEN71_RS00415 at 87.954 kb on + strand, within QEN71_RS00415 at 87.955 kb on - strand, within QEN71_RS00415 at 87.955 kb on - strand, within QEN71_RS00415 at 87.955 kb on - strand, within QEN71_RS00415 at 88.128 kb on + strand, within QEN71_RS00415 at 88.129 kb on - strand, within QEN71_RS00415 at 88.246 kb on - strand, within QEN71_RS00415 at 88.260 kb on + strand, within QEN71_RS00415 at 88.261 kb on - strand, within QEN71_RS00415 at 88.278 kb on + strand, within QEN71_RS00415 at 88.279 kb on - strand, within QEN71_RS00415 at 88.586 kb on + strand at 88.586 kb on + strand at 88.586 kb on + strand at 88.587 kb on - strand at 88.587 kb on - strand at 88.587 kb on - strand at 88.623 kb on + strand at 88.623 kb on + strand at 88.623 kb on + strand at 88.624 kb on - strand at 88.683 kb on + strand at 88.683 kb on + strand at 88.683 kb on + strand at 88.684 kb on - strand at 88.684 kb on - strand at 88.967 kb on - strand, within QEN71_RS00420 at 89.062 kb on + strand, within QEN71_RS00420 at 89.063 kb on - strand, within QEN71_RS00420 at 89.063 kb on - strand, within QEN71_RS00420 at 89.115 kb on + strand, within QEN71_RS00420 at 89.115 kb on + strand, within QEN71_RS00420 at 89.116 kb on - strand, within QEN71_RS00420 at 89.116 kb on - strand, within QEN71_RS00420 at 89.296 kb on - strand, within QEN71_RS00420 at 89.296 kb on - strand, within QEN71_RS00420 at 89.296 kb on - strand, within QEN71_RS00420 at 89.323 kb on - strand, within QEN71_RS00420 at 89.323 kb on - strand, within QEN71_RS00420 at 89.323 kb on - strand, within QEN71_RS00420 at 89.443 kb on - strand, within QEN71_RS00420 at 89.443 kb on - strand, within QEN71_RS00420 at 89.443 kb on - strand, within QEN71_RS00420 at 89.469 kb on + strand, within QEN71_RS00420 at 89.469 kb on + strand, within QEN71_RS00420 at 89.469 kb on + strand, within QEN71_RS00420 at 89.470 kb on - strand, within QEN71_RS00420 at 89.470 kb on - strand, within QEN71_RS00420 at 89.503 kb on + strand, within QEN71_RS00420 at 89.504 kb on - strand, within QEN71_RS00420 at 89.850 kb on + strand, within QEN71_RS00420 at 89.851 kb on - strand, within QEN71_RS00420 at 89.851 kb on - strand, within QEN71_RS00420 at 89.851 kb on - strand, within QEN71_RS00420 at 89.929 kb on + strand, within QEN71_RS00420 at 89.929 kb on + strand, within QEN71_RS00420 at 89.930 kb on - strand, within QEN71_RS00420 at 89.930 kb on - strand, within QEN71_RS00420 at 89.931 kb on + strand, within QEN71_RS00420 at 90.174 kb on - strand, within QEN71_RS00420 at 90.342 kb on + strand, within QEN71_RS00420 at 90.342 kb on + strand, within QEN71_RS00420 at 90.343 kb on - strand, within QEN71_RS00420 at 90.381 kb on + strand, within QEN71_RS00420 at 90.382 kb on - strand, within QEN71_RS00420 at 90.382 kb on - strand, within QEN71_RS00420 at 90.382 kb on - strand, within QEN71_RS00420 at 90.432 kb on + strand, within QEN71_RS00420 at 90.432 kb on + strand, within QEN71_RS00420 at 90.433 kb on - strand, within QEN71_RS00420 at 90.614 kb on - strand, within QEN71_RS00420 at 91.019 kb on + strand, within QEN71_RS00420 at 91.019 kb on + strand, within QEN71_RS00420 at 91.019 kb on + strand, within QEN71_RS00420 at 91.020 kb on - strand, within QEN71_RS00420 at 91.020 kb on - strand, within QEN71_RS00420 at 91.020 kb on - strand, within QEN71_RS00420 at 91.040 kb on - strand, within QEN71_RS00420 at 91.040 kb on - strand, within QEN71_RS00420 at 91.041 kb on + strand, within QEN71_RS00420 at 91.041 kb on + strand, within QEN71_RS00420 at 91.041 kb on + strand, within QEN71_RS00420 at 91.041 kb on + strand, within QEN71_RS00420 at 91.041 kb on + strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.042 kb on - strand, within QEN71_RS00420 at 91.273 kb on - strand, within QEN71_RS00420 at 91.273 kb on - strand, within QEN71_RS00420 at 91.335 kb on + strand, within QEN71_RS00420 at 91.335 kb on + strand, within QEN71_RS00420 at 91.341 kb on + strand, within QEN71_RS00420 at 91.341 kb on + strand, within QEN71_RS00420 at 91.342 kb on - strand, within QEN71_RS00420 at 91.342 kb on - strand, within QEN71_RS00420 at 91.408 kb on + strand, within QEN71_RS00420 at 91.410 kb on + strand, within QEN71_RS00420 at 91.411 kb on - strand, within QEN71_RS00420 at 91.418 kb on + strand, within QEN71_RS00420 at 91.418 kb on + strand, within QEN71_RS00420 at 91.418 kb on + strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.419 kb on - strand, within QEN71_RS00420 at 91.605 kb on + strand at 91.605 kb on + strand at 91.606 kb on - strand at 91.606 kb on - strand at 91.653 kb on + strand at 91.654 kb on - strand at 91.768 kb on + strand at 91.768 kb on + strand at 91.768 kb on + strand at 91.768 kb on + strand at 91.768 kb on + strand at 91.768 kb on + strand at 91.768 kb on + strand at 91.769 kb on - strand at 91.769 kb on - strand at 91.769 kb on - strand at 91.769 kb on - strand at 91.770 kb on + strand at 91.770 kb on + strand at 91.771 kb on - strand at 91.897 kb on + strand at 91.897 kb on + strand at 91.898 kb on - strand at 91.898 kb on - strand at 91.898 kb on - strand at 91.898 kb on - strand at 91.898 kb on - strand at 91.899 kb on + strand at 91.899 kb on + strand at 91.911 kb on + strand at 91.911 kb on + strand at 91.912 kb on - strand at 91.912 kb on - strand at 91.912 kb on - strand at 91.912 kb on - strand at 91.916 kb on + strand at 91.916 kb on + strand at 91.916 kb on + strand at 91.916 kb on + strand at 91.917 kb on - strand at 91.917 kb on - strand at 91.917 kb on - strand at 91.953 kb on + strand at 91.953 kb on + strand at 91.953 kb on + strand at 91.967 kb on + strand at 91.977 kb on + strand at 91.977 kb on + strand at 91.978 kb on - strand at 91.978 kb on - strand at 92.030 kb on + strand at 92.031 kb on - strand at 92.110 kb on + strand at 92.110 kb on + strand at 92.110 kb on + strand at 92.111 kb on - strand at 92.111 kb on - strand at 92.111 kb on - strand at 92.179 kb on - strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.254 kb on + strand at 92.255 kb on - strand at 92.255 kb on - strand at 92.255 kb on - strand at 92.272 kb on + strand, within QEN71_RS00425 at 92.273 kb on - strand, within QEN71_RS00425 at 92.273 kb on - strand, within QEN71_RS00425 at 92.273 kb on - strand, within QEN71_RS00425 at 92.343 kb on - strand, within QEN71_RS00425 at 92.360 kb on - strand, within QEN71_RS00425 at 92.370 kb on + strand, within QEN71_RS00425 at 92.371 kb on - strand, within QEN71_RS00425 at 92.371 kb on - strand, within QEN71_RS00425 at 92.371 kb on - strand, within QEN71_RS00425 at 92.377 kb on + strand, within QEN71_RS00425 at 92.536 kb on - strand at 92.536 kb on - strand at 92.723 kb on + strand, within QEN71_RS00430 at 92.724 kb on - strand, within QEN71_RS00430 at 92.724 kb on - strand, within QEN71_RS00430 at 92.724 kb on - strand, within QEN71_RS00430 at 92.738 kb on + strand, within QEN71_RS00430 at 92.738 kb on + strand, within QEN71_RS00430 at 92.738 kb on + strand, within QEN71_RS00430 at 92.738 kb on + strand, within QEN71_RS00430 at 92.739 kb on - strand, within QEN71_RS00430 at 92.784 kb on - strand, within QEN71_RS00430
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 87,634 - QEN71_RS00415 0.27 +0.3 87,741 + QEN71_RS00415 0.36 -0.1 87,742 - QEN71_RS00415 0.36 -0.3 87,742 - QEN71_RS00415 0.36 +1.5 87,774 + QEN71_RS00415 0.38 -0.7 87,775 - QEN71_RS00415 0.38 -0.0 87,775 - QEN71_RS00415 0.38 +0.0 87,807 + QEN71_RS00415 0.41 -0.1 87,807 + QEN71_RS00415 0.41 +0.3 87,808 - QEN71_RS00415 0.41 -1.6 87,808 - QEN71_RS00415 0.41 -0.4 87,808 - QEN71_RS00415 0.41 -0.2 87,828 + QEN71_RS00415 0.43 +1.0 87,828 + QEN71_RS00415 0.43 +0.7 87,828 + QEN71_RS00415 0.43 -0.2 87,829 - QEN71_RS00415 0.43 -0.0 87,829 - QEN71_RS00415 0.43 -0.2 87,829 - QEN71_RS00415 0.43 +1.6 87,954 + QEN71_RS00415 0.53 -0.0 87,954 + QEN71_RS00415 0.53 +0.9 87,954 + QEN71_RS00415 0.53 +1.5 87,954 + QEN71_RS00415 0.53 -0.1 87,955 - QEN71_RS00415 0.53 +0.3 87,955 - QEN71_RS00415 0.53 +0.3 87,955 - QEN71_RS00415 0.53 -1.0 88,128 + QEN71_RS00415 0.66 -1.9 88,129 - QEN71_RS00415 0.66 -0.2 88,246 - QEN71_RS00415 0.76 +0.6 88,260 + QEN71_RS00415 0.77 -0.7 88,261 - QEN71_RS00415 0.77 +0.5 88,278 + QEN71_RS00415 0.78 -0.3 88,279 - QEN71_RS00415 0.78 +0.1 88,586 + -1.7 88,586 + +1.0 88,586 + -0.8 88,587 - -0.9 88,587 - -0.6 88,587 - -0.3 88,623 + -0.0 88,623 + -0.7 88,623 + -1.4 88,624 - +0.1 88,683 + +0.0 88,683 + -0.4 88,683 + -0.1 88,684 - -0.7 88,684 - +1.4 88,967 - QEN71_RS00420 0.11 -0.6 89,062 + QEN71_RS00420 0.14 +0.4 89,063 - QEN71_RS00420 0.14 -0.2 89,063 - QEN71_RS00420 0.14 +1.8 89,115 + QEN71_RS00420 0.15 +0.2 89,115 + QEN71_RS00420 0.15 -0.0 89,116 - QEN71_RS00420 0.16 -0.4 89,116 - QEN71_RS00420 0.16 +0.8 89,296 - QEN71_RS00420 0.21 +0.2 89,296 - QEN71_RS00420 0.21 -0.2 89,296 - QEN71_RS00420 0.21 -0.6 89,323 - QEN71_RS00420 0.22 -0.8 89,323 - QEN71_RS00420 0.22 -1.6 89,323 - QEN71_RS00420 0.22 +0.5 89,443 - QEN71_RS00420 0.26 +0.9 89,443 - QEN71_RS00420 0.26 -0.4 89,443 - QEN71_RS00420 0.26 -0.4 89,469 + QEN71_RS00420 0.27 +0.0 89,469 + QEN71_RS00420 0.27 +0.3 89,469 + QEN71_RS00420 0.27 -1.0 89,470 - QEN71_RS00420 0.27 +0.7 89,470 - QEN71_RS00420 0.27 +0.0 89,503 + QEN71_RS00420 0.28 -0.4 89,504 - QEN71_RS00420 0.28 -0.1 89,850 + QEN71_RS00420 0.39 +0.5 89,851 - QEN71_RS00420 0.39 -0.4 89,851 - QEN71_RS00420 0.39 -0.2 89,851 - QEN71_RS00420 0.39 -1.0 89,929 + QEN71_RS00420 0.41 -0.7 89,929 + QEN71_RS00420 0.41 -0.5 89,930 - QEN71_RS00420 0.41 +0.7 89,930 - QEN71_RS00420 0.41 -0.8 89,931 + QEN71_RS00420 0.41 +0.2 90,174 - QEN71_RS00420 0.49 -0.1 90,342 + QEN71_RS00420 0.54 +0.3 90,342 + QEN71_RS00420 0.54 -1.0 90,343 - QEN71_RS00420 0.54 -0.6 90,381 + QEN71_RS00420 0.55 -2.5 90,382 - QEN71_RS00420 0.55 -0.3 90,382 - QEN71_RS00420 0.55 +0.3 90,382 - QEN71_RS00420 0.55 +0.0 90,432 + QEN71_RS00420 0.57 +0.6 90,432 + QEN71_RS00420 0.57 -0.7 90,433 - QEN71_RS00420 0.57 -0.4 90,614 - QEN71_RS00420 0.63 -0.2 91,019 + QEN71_RS00420 0.75 +1.6 91,019 + QEN71_RS00420 0.75 +0.8 91,019 + QEN71_RS00420 0.75 +0.3 91,020 - QEN71_RS00420 0.75 -0.2 91,020 - QEN71_RS00420 0.75 -0.5 91,020 - QEN71_RS00420 0.75 +0.3 91,040 - QEN71_RS00420 0.76 -2.0 91,040 - QEN71_RS00420 0.76 -0.4 91,041 + QEN71_RS00420 0.76 -0.0 91,041 + QEN71_RS00420 0.76 -0.4 91,041 + QEN71_RS00420 0.76 +0.1 91,041 + QEN71_RS00420 0.76 -0.9 91,041 + QEN71_RS00420 0.76 +1.4 91,042 - QEN71_RS00420 0.76 +0.6 91,042 - QEN71_RS00420 0.76 +0.0 91,042 - QEN71_RS00420 0.76 -0.3 91,042 - QEN71_RS00420 0.76 -0.2 91,042 - QEN71_RS00420 0.76 -0.2 91,042 - QEN71_RS00420 0.76 -0.1 91,042 - QEN71_RS00420 0.76 -0.4 91,042 - QEN71_RS00420 0.76 -0.2 91,273 - QEN71_RS00420 0.83 -0.3 91,273 - QEN71_RS00420 0.83 +0.0 91,335 + QEN71_RS00420 0.85 -0.2 91,335 + QEN71_RS00420 0.85 -0.9 91,341 + QEN71_RS00420 0.85 -0.9 91,341 + QEN71_RS00420 0.85 -1.2 91,342 - QEN71_RS00420 0.85 -0.2 91,342 - QEN71_RS00420 0.85 +0.3 91,408 + QEN71_RS00420 0.88 -0.7 91,410 + QEN71_RS00420 0.88 +0.4 91,411 - QEN71_RS00420 0.88 -0.9 91,418 + QEN71_RS00420 0.88 +0.8 91,418 + QEN71_RS00420 0.88 -0.6 91,418 + QEN71_RS00420 0.88 -0.0 91,419 - QEN71_RS00420 0.88 -0.2 91,419 - QEN71_RS00420 0.88 -0.3 91,419 - QEN71_RS00420 0.88 +2.3 91,419 - QEN71_RS00420 0.88 -0.2 91,419 - QEN71_RS00420 0.88 +0.2 91,419 - QEN71_RS00420 0.88 -0.2 91,419 - QEN71_RS00420 0.88 +1.2 91,605 + -0.2 91,605 + -0.9 91,606 - +0.5 91,606 - -1.9 91,653 + +0.4 91,654 - +0.9 91,768 + +1.3 91,768 + +1.3 91,768 + +0.2 91,768 + +1.3 91,768 + -0.2 91,768 + -1.0 91,768 + -0.2 91,769 - +0.8 91,769 - -0.2 91,769 - +0.6 91,769 - +1.0 91,770 + -1.0 91,770 + -0.4 91,771 - -0.1 91,897 + -1.0 91,897 + +0.3 91,898 - -0.1 91,898 - -0.1 91,898 - +0.4 91,898 - +0.4 91,898 - -0.9 91,899 + +0.7 91,899 + -0.3 91,911 + +2.2 91,911 + -0.2 91,912 - +0.9 91,912 - +0.1 91,912 - +0.3 91,912 - +0.6 91,916 + +0.3 91,916 + -0.7 91,916 + -0.5 91,916 + +0.6 91,917 - -0.1 91,917 - -0.0 91,917 - -1.0 91,953 + +0.7 91,953 + +0.4 91,953 + +0.4 91,967 + +0.3 91,977 + -1.5 91,977 + +0.3 91,978 - +0.0 91,978 - -0.4 92,030 + -0.7 92,031 - -0.7 92,110 + -0.2 92,110 + -0.0 92,110 + -0.0 92,111 - -1.0 92,111 - +0.0 92,111 - -0.7 92,179 - +0.2 92,254 + -1.8 92,254 + +0.4 92,254 + -1.0 92,254 + -0.3 92,254 + -0.7 92,254 + -0.2 92,254 + -1.6 92,254 + +0.5 92,255 - +0.4 92,255 - -0.1 92,255 - -0.2 92,272 + QEN71_RS00425 0.15 -0.2 92,273 - QEN71_RS00425 0.15 -0.5 92,273 - QEN71_RS00425 0.15 +0.3 92,273 - QEN71_RS00425 0.15 +0.6 92,343 - QEN71_RS00425 0.48 +0.3 92,360 - QEN71_RS00425 0.56 +0.3 92,370 + QEN71_RS00425 0.61 -1.0 92,371 - QEN71_RS00425 0.62 -0.4 92,371 - QEN71_RS00425 0.62 -0.2 92,371 - QEN71_RS00425 0.62 +0.1 92,377 + QEN71_RS00425 0.64 -0.4 92,536 - -0.1 92,536 - +0.4 92,723 + QEN71_RS00430 0.14 -0.3 92,724 - QEN71_RS00430 0.14 -0.5 92,724 - QEN71_RS00430 0.14 +0.3 92,724 - QEN71_RS00430 0.14 -1.2 92,738 + QEN71_RS00430 0.16 -0.7 92,738 + QEN71_RS00430 0.16 -0.4 92,738 + QEN71_RS00430 0.16 +0.2 92,738 + QEN71_RS00430 0.16 -1.0 92,739 - QEN71_RS00430 0.16 +0.9 92,784 - QEN71_RS00430 0.20 -0.7
Or see this region's nucleotide sequence