Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04124

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
4,623,207	-				-1.4
4,623,341	-		MIT1002_04123	0.18	-1.1
4,623,390	+		MIT1002_04123	0.26	-2.1
4,623,423	+		MIT1002_04123	0.31	-3.0
4,623,428	+		MIT1002_04123	0.32	-1.5
4,623,428	+		MIT1002_04123	0.32	+1.3
4,623,440	+		MIT1002_04123	0.34	-0.8
4,623,440	+		MIT1002_04123	0.34	+2.3
4,623,441	-		MIT1002_04123	0.34	-0.1
4,623,474	-		MIT1002_04123	0.39	+0.6
4,623,484	-		MIT1002_04123	0.41	-0.8
4,623,494	-		MIT1002_04123	0.42	-0.0
4,623,502	+		MIT1002_04123	0.44	-0.0
4,623,510	-		MIT1002_04123	0.45	-2.8
4,623,510	-		MIT1002_04123	0.45	+1.3
4,623,511	+		MIT1002_04123	0.45	-2.0
4,623,543	-		MIT1002_04123	0.50	+1.3
4,623,611	+		MIT1002_04123	0.61	-0.2
4,623,611	+		MIT1002_04123	0.61	+0.1
4,623,664	-		MIT1002_04123	0.69	+0.7
4,623,755	-		MIT1002_04123	0.83	+0.2
4,623,791	+		MIT1002_04123	0.89	-2.1
4,623,816	+				-0.9
4,623,844	-				-0.0
4,623,898	+				-1.3
4,623,901	-				+0.3
4,623,901	-				+1.1
4,623,901	-				-0.2
4,623,903	+				-0.5
4,623,903	+				+0.2
4,623,910	+				-0.0
4,623,911	-				+1.0
4,623,911	-				-0.3
4,623,918	-				-0.0
4,623,989	-				-0.0
4,623,991	-				-0.6
4,624,052	-				-2.5
4,624,152	+				-0.2
4,624,165	-				+0.1
4,624,196	-				-0.8
4,624,219	+				-0.4
4,624,354	+				-0.6
4,624,377	+		MIT1002_04124	0.10	-0.6
4,624,916	-		MIT1002_04124	0.39	-0.0
4,624,921	+		MIT1002_04124	0.39	-0.3
4,624,921	+		MIT1002_04124	0.39	-1.0
4,624,959	-		MIT1002_04124	0.41	-0.6
4,625,169	-		MIT1002_04124	0.52	-1.2
4,625,171	+		MIT1002_04124	0.52	-0.0
4,625,171	+		MIT1002_04124	0.52	-0.8
4,625,179	-		MIT1002_04124	0.53	-0.3
4,625,276	-		MIT1002_04124	0.58	-0.8
4,625,308	-		MIT1002_04124	0.59	-0.0
4,625,424	+		MIT1002_04124	0.66	-0.0
4,625,593	-		MIT1002_04124	0.74	-0.8
4,625,645	+		MIT1002_04124	0.77	-0.6
4,625,662	-		MIT1002_04124	0.78	-1.2
4,626,225	+				+1.8
4,626,264	-				+0.1
4,626,462	+				+1.4
4,626,486	+				+2.0
4,626,500	-				+0.7
4,626,508	+				+0.2
4,626,723	+				+0.2
4,626,731	-				+0.6
4,626,812	+				+0.5
4,626,917	-				+1.7
4,626,917	-				+1.2
4,626,935	+				-1.2
4,626,941	+				+2.0
4,626,943	-				-0.6
4,626,943	-				-1.2