Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04093

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
4,591,350	+		MIT1002_04092	0.36	-1.7
4,591,358	-		MIT1002_04092	0.36	-2.8
4,591,448	+		MIT1002_04092	0.42	-3.0
4,591,490	-		MIT1002_04092	0.45	-0.6
4,591,534	-		MIT1002_04092	0.48	-2.2
4,591,656	-		MIT1002_04092	0.55	-2.9
4,591,744	+		MIT1002_04092	0.61	-3.0
4,591,868	+		MIT1002_04092	0.69	-2.6
4,591,883	-		MIT1002_04092	0.70	-1.9
4,591,955	-		MIT1002_04092	0.75	-1.9
4,591,980	+		MIT1002_04092	0.76	-1.2
4,592,027	-		MIT1002_04092	0.79	-0.8
4,592,027	-		MIT1002_04092	0.79	-2.5
4,592,064	+		MIT1002_04092	0.82	-0.0
4,592,072	-		MIT1002_04092	0.82	-2.1
4,592,148	+		MIT1002_04092	0.87	-1.9
4,592,171	+		MIT1002_04092	0.89	-2.6
4,592,181	-		MIT1002_04092	0.89	-3.5
4,592,226	+				-4.3
4,592,299	-				-3.0
4,592,347	-				-1.4
4,592,356	+				-3.1
4,592,654	+		MIT1002_04093	0.51	-1.6
4,592,862	-		MIT1002_04093	0.86	-3.5
4,592,901	+				-1.9
4,592,909	-				-2.0
4,592,909	-				-1.5
4,593,018	-				-0.0
4,593,029	-				-2.1
4,593,095	-		MIT1002_04094	0.32	+0.7
4,593,111	+		MIT1002_04094	0.37	-0.3
4,593,118	+		MIT1002_04094	0.40	-0.7
4,593,135	+		MIT1002_04094	0.45	+0.7
4,593,199	-		MIT1002_04094	0.67	+0.2
4,593,200	-		MIT1002_04094	0.68	-1.3
4,593,354	+				-0.4
4,593,371	-				+0.1
4,593,431	+				+0.8
4,593,431	+				-0.9
4,593,439	-				-0.0
4,593,447	+				+0.3
4,593,528	+				-0.4
4,593,536	-				+2.4
4,593,537	-				+0.8
4,593,612	-				-0.3
4,593,630	+				+0.8
4,593,796	-		MIT1002_04095	0.29	+0.3
4,593,814	+		MIT1002_04095	0.37	+1.5
4,593,835	+		MIT1002_04095	0.46	+0.2
4,593,835	+		MIT1002_04095	0.46	+0.1
4,593,849	+		MIT1002_04095	0.52	-1.5
4,593,849	+		MIT1002_04095	0.52	+0.1