Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04087 and MIT1002_04088 are separated by 43 nucleotides MIT1002_04088 and MIT1002_04089 are separated by 227 nucleotides
MIT1002_04087: MIT1002_04087 - Type-1 restriction enzyme R protein, at 4,580,318 to 4,583,599
_04087
MIT1002_04088: MIT1002_04088 - Reverse transcriptase (RNA-dependent DNA polymerase), at 4,583,643 to 4,586,585
_04088
MIT1002_04089: MIT1002_04089 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 4,586,813 to 4,588,552
_04089
Position (kb) 4583
4584
4585
4586
4587 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4582.650 kb on - strand, within MIT1002_04087 at 4582.695 kb on - strand, within MIT1002_04087 at 4582.709 kb on - strand, within MIT1002_04087 at 4582.725 kb on - strand, within MIT1002_04087 at 4582.725 kb on - strand, within MIT1002_04087 at 4582.730 kb on - strand, within MIT1002_04087 at 4582.748 kb on + strand, within MIT1002_04087 at 4582.766 kb on - strand, within MIT1002_04087 at 4582.781 kb on + strand, within MIT1002_04087 at 4582.898 kb on - strand, within MIT1002_04087 at 4582.904 kb on + strand, within MIT1002_04087 at 4582.914 kb on + strand, within MIT1002_04087 at 4582.914 kb on + strand, within MIT1002_04087 at 4582.914 kb on + strand, within MIT1002_04087 at 4582.914 kb on + strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4582.922 kb on - strand, within MIT1002_04087 at 4583.005 kb on - strand, within MIT1002_04087 at 4583.110 kb on + strand, within MIT1002_04087 at 4583.110 kb on + strand, within MIT1002_04087 at 4583.183 kb on - strand, within MIT1002_04087 at 4583.183 kb on - strand, within MIT1002_04087 at 4583.194 kb on + strand, within MIT1002_04087 at 4583.233 kb on + strand, within MIT1002_04087 at 4583.233 kb on + strand, within MIT1002_04087 at 4583.301 kb on - strand at 4583.322 kb on - strand at 4583.341 kb on + strand at 4583.346 kb on + strand at 4583.348 kb on + strand at 4583.349 kb on - strand at 4583.349 kb on - strand at 4583.349 kb on - strand at 4583.402 kb on - strand at 4583.415 kb on - strand at 4583.441 kb on + strand at 4583.441 kb on + strand at 4583.453 kb on + strand at 4583.619 kb on + strand at 4583.667 kb on + strand at 4583.667 kb on + strand at 4583.667 kb on + strand at 4583.675 kb on - strand at 4583.675 kb on - strand at 4583.767 kb on + strand at 4583.794 kb on - strand at 4583.832 kb on - strand at 4583.870 kb on - strand at 4583.872 kb on + strand at 4583.901 kb on + strand at 4583.915 kb on - strand at 4584.010 kb on - strand, within MIT1002_04088 at 4584.012 kb on + strand, within MIT1002_04088 at 4584.012 kb on + strand, within MIT1002_04088 at 4584.089 kb on + strand, within MIT1002_04088 at 4584.089 kb on + strand, within MIT1002_04088 at 4584.089 kb on + strand, within MIT1002_04088 at 4584.097 kb on - strand, within MIT1002_04088 at 4584.166 kb on + strand, within MIT1002_04088 at 4584.174 kb on - strand, within MIT1002_04088 at 4584.185 kb on + strand, within MIT1002_04088 at 4584.193 kb on - strand, within MIT1002_04088 at 4584.193 kb on - strand, within MIT1002_04088 at 4584.193 kb on - strand, within MIT1002_04088 at 4584.228 kb on + strand, within MIT1002_04088 at 4584.240 kb on + strand, within MIT1002_04088 at 4584.242 kb on + strand, within MIT1002_04088 at 4584.242 kb on + strand, within MIT1002_04088 at 4584.243 kb on - strand, within MIT1002_04088 at 4584.248 kb on - strand, within MIT1002_04088 at 4584.248 kb on - strand, within MIT1002_04088 at 4584.272 kb on - strand, within MIT1002_04088 at 4584.403 kb on - strand, within MIT1002_04088 at 4584.436 kb on + strand, within MIT1002_04088 at 4584.438 kb on + strand, within MIT1002_04088 at 4584.446 kb on - strand, within MIT1002_04088 at 4584.478 kb on + strand, within MIT1002_04088 at 4584.518 kb on + strand, within MIT1002_04088 at 4584.551 kb on - strand, within MIT1002_04088 at 4584.613 kb on - strand, within MIT1002_04088 at 4584.698 kb on - strand, within MIT1002_04088 at 4584.748 kb on - strand, within MIT1002_04088 at 4584.991 kb on - strand, within MIT1002_04088 at 4585.061 kb on - strand, within MIT1002_04088 at 4585.063 kb on + strand, within MIT1002_04088 at 4585.071 kb on - strand, within MIT1002_04088 at 4585.209 kb on - strand, within MIT1002_04088 at 4585.257 kb on - strand, within MIT1002_04088 at 4585.257 kb on - strand, within MIT1002_04088 at 4585.268 kb on + strand, within MIT1002_04088 at 4585.344 kb on - strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.482 kb on + strand, within MIT1002_04088 at 4585.490 kb on - strand, within MIT1002_04088 at 4585.490 kb on - strand, within MIT1002_04088 at 4585.490 kb on - strand, within MIT1002_04088 at 4585.490 kb on - strand, within MIT1002_04088 at 4585.490 kb on - strand, within MIT1002_04088 at 4585.521 kb on - strand, within MIT1002_04088 at 4585.671 kb on - strand, within MIT1002_04088 at 4585.788 kb on + strand, within MIT1002_04088 at 4585.851 kb on + strand, within MIT1002_04088 at 4585.868 kb on + strand, within MIT1002_04088 at 4585.874 kb on + strand, within MIT1002_04088 at 4585.883 kb on - strand, within MIT1002_04088 at 4585.893 kb on - strand, within MIT1002_04088 at 4586.014 kb on - strand, within MIT1002_04088 at 4586.019 kb on - strand, within MIT1002_04088 at 4586.072 kb on + strand, within MIT1002_04088 at 4586.072 kb on + strand, within MIT1002_04088 at 4586.072 kb on + strand, within MIT1002_04088 at 4586.102 kb on - strand, within MIT1002_04088 at 4586.127 kb on + strand, within MIT1002_04088 at 4586.127 kb on + strand, within MIT1002_04088 at 4586.134 kb on + strand, within MIT1002_04088 at 4586.135 kb on - strand, within MIT1002_04088 at 4586.163 kb on + strand, within MIT1002_04088 at 4586.184 kb on - strand, within MIT1002_04088 at 4586.216 kb on - strand, within MIT1002_04088 at 4586.234 kb on + strand, within MIT1002_04088 at 4586.335 kb on + strand at 4586.369 kb on + strand at 4586.406 kb on + strand at 4586.465 kb on - strand at 4586.476 kb on + strand at 4586.525 kb on + strand at 4586.525 kb on + strand at 4586.536 kb on - strand at 4586.538 kb on - strand at 4586.538 kb on - strand at 4586.616 kb on - strand at 4586.663 kb on + strand at 4586.777 kb on + strand at 4586.777 kb on + strand at 4586.785 kb on - strand at 4586.811 kb on + strand at 4586.811 kb on + strand at 4586.819 kb on - strand at 4586.831 kb on - strand at 4586.831 kb on - strand at 4586.973 kb on - strand at 4587.015 kb on + strand, within MIT1002_04089 at 4587.101 kb on + strand, within MIT1002_04089 at 4587.102 kb on + strand, within MIT1002_04089 at 4587.112 kb on + strand, within MIT1002_04089 at 4587.157 kb on - strand, within MIT1002_04089 at 4587.171 kb on - strand, within MIT1002_04089 at 4587.184 kb on - strand, within MIT1002_04089 at 4587.206 kb on + strand, within MIT1002_04089 at 4587.224 kb on - strand, within MIT1002_04089 at 4587.231 kb on + strand, within MIT1002_04089 at 4587.262 kb on - strand, within MIT1002_04089 at 4587.265 kb on + strand, within MIT1002_04089 at 4587.283 kb on + strand, within MIT1002_04089 at 4587.283 kb on + strand, within MIT1002_04089 at 4587.299 kb on + strand, within MIT1002_04089 at 4587.299 kb on + strand, within MIT1002_04089 at 4587.307 kb on - strand, within MIT1002_04089 at 4587.309 kb on + strand, within MIT1002_04089 at 4587.309 kb on + strand, within MIT1002_04089 at 4587.317 kb on - strand, within MIT1002_04089 at 4587.354 kb on - strand, within MIT1002_04089 at 4587.397 kb on + strand, within MIT1002_04089 at 4587.397 kb on + strand, within MIT1002_04089 at 4587.397 kb on - strand, within MIT1002_04089 at 4587.466 kb on + strand, within MIT1002_04089 at 4587.474 kb on - strand, within MIT1002_04089 at 4587.474 kb on - strand, within MIT1002_04089
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 4,582,650 - MIT1002_04087 0.71 -0.3 4,582,695 - MIT1002_04087 0.72 +0.3 4,582,709 - MIT1002_04087 0.73 +0.3 4,582,725 - MIT1002_04087 0.73 -0.7 4,582,725 - MIT1002_04087 0.73 -2.1 4,582,730 - MIT1002_04087 0.73 -0.3 4,582,748 + MIT1002_04087 0.74 -0.1 4,582,766 - MIT1002_04087 0.75 -0.8 4,582,781 + MIT1002_04087 0.75 +0.4 4,582,898 - MIT1002_04087 0.79 -0.6 4,582,904 + MIT1002_04087 0.79 -0.0 4,582,914 + MIT1002_04087 0.79 +0.5 4,582,914 + MIT1002_04087 0.79 +2.6 4,582,914 + MIT1002_04087 0.79 -0.6 4,582,914 + MIT1002_04087 0.79 +0.5 4,582,922 - MIT1002_04087 0.79 +1.7 4,582,922 - MIT1002_04087 0.79 -1.2 4,582,922 - MIT1002_04087 0.79 -2.0 4,582,922 - MIT1002_04087 0.79 -0.5 4,582,922 - MIT1002_04087 0.79 +1.0 4,582,922 - MIT1002_04087 0.79 +1.4 4,582,922 - MIT1002_04087 0.79 -1.7 4,582,922 - MIT1002_04087 0.79 -0.1 4,582,922 - MIT1002_04087 0.79 +0.3 4,582,922 - MIT1002_04087 0.79 -0.5 4,583,005 - MIT1002_04087 0.82 -1.4 4,583,110 + MIT1002_04087 0.85 -0.9 4,583,110 + MIT1002_04087 0.85 +1.4 4,583,183 - MIT1002_04087 0.87 -0.8 4,583,183 - MIT1002_04087 0.87 -1.9 4,583,194 + MIT1002_04087 0.88 +0.2 4,583,233 + MIT1002_04087 0.89 -1.3 4,583,233 + MIT1002_04087 0.89 +1.0 4,583,301 - +0.4 4,583,322 - +0.1 4,583,341 + -0.1 4,583,346 + +0.6 4,583,348 + -0.3 4,583,349 - +0.7 4,583,349 - -0.3 4,583,349 - +0.0 4,583,402 - +1.3 4,583,415 - -2.1 4,583,441 + -0.5 4,583,441 + +0.9 4,583,453 + -0.7 4,583,619 + -0.7 4,583,667 + +0.7 4,583,667 + +0.3 4,583,667 + +0.1 4,583,675 - -0.1 4,583,675 - -1.1 4,583,767 + -0.7 4,583,794 - -1.7 4,583,832 - +0.4 4,583,870 - -0.2 4,583,872 + -1.5 4,583,901 + -0.5 4,583,915 - +0.0 4,584,010 - MIT1002_04088 0.12 +0.1 4,584,012 + MIT1002_04088 0.13 -0.7 4,584,012 + MIT1002_04088 0.13 -1.5 4,584,089 + MIT1002_04088 0.15 +0.8 4,584,089 + MIT1002_04088 0.15 +0.4 4,584,089 + MIT1002_04088 0.15 +3.9 4,584,097 - MIT1002_04088 0.15 -0.4 4,584,166 + MIT1002_04088 0.18 +0.9 4,584,174 - MIT1002_04088 0.18 +0.9 4,584,185 + MIT1002_04088 0.18 +0.2 4,584,193 - MIT1002_04088 0.19 -1.4 4,584,193 - MIT1002_04088 0.19 -0.2 4,584,193 - MIT1002_04088 0.19 +1.0 4,584,228 + MIT1002_04088 0.20 +1.3 4,584,240 + MIT1002_04088 0.20 +2.7 4,584,242 + MIT1002_04088 0.20 +0.6 4,584,242 + MIT1002_04088 0.20 -0.4 4,584,243 - MIT1002_04088 0.20 -0.9 4,584,248 - MIT1002_04088 0.21 +1.7 4,584,248 - MIT1002_04088 0.21 -0.3 4,584,272 - MIT1002_04088 0.21 +3.6 4,584,403 - MIT1002_04088 0.26 +0.5 4,584,436 + MIT1002_04088 0.27 +1.6 4,584,438 + MIT1002_04088 0.27 -0.7 4,584,446 - MIT1002_04088 0.27 +2.3 4,584,478 + MIT1002_04088 0.28 -0.5 4,584,518 + MIT1002_04088 0.30 -0.3 4,584,551 - MIT1002_04088 0.31 +1.4 4,584,613 - MIT1002_04088 0.33 -0.8 4,584,698 - MIT1002_04088 0.36 +0.3 4,584,748 - MIT1002_04088 0.38 +0.8 4,584,991 - MIT1002_04088 0.46 -0.4 4,585,061 - MIT1002_04088 0.48 -0.7 4,585,063 + MIT1002_04088 0.48 +0.5 4,585,071 - MIT1002_04088 0.49 -0.2 4,585,209 - MIT1002_04088 0.53 -0.4 4,585,257 - MIT1002_04088 0.55 +0.5 4,585,257 - MIT1002_04088 0.55 -0.4 4,585,268 + MIT1002_04088 0.55 +0.3 4,585,344 - MIT1002_04088 0.58 -0.8 4,585,482 + MIT1002_04088 0.62 +1.0 4,585,482 + MIT1002_04088 0.62 +2.4 4,585,482 + MIT1002_04088 0.62 +2.5 4,585,482 + MIT1002_04088 0.62 -0.5 4,585,482 + MIT1002_04088 0.62 -0.3 4,585,482 + MIT1002_04088 0.62 +1.0 4,585,482 + MIT1002_04088 0.62 +0.8 4,585,482 + MIT1002_04088 0.62 -2.6 4,585,490 - MIT1002_04088 0.63 +2.0 4,585,490 - MIT1002_04088 0.63 +0.4 4,585,490 - MIT1002_04088 0.63 +0.5 4,585,490 - MIT1002_04088 0.63 +0.6 4,585,490 - MIT1002_04088 0.63 -0.1 4,585,521 - MIT1002_04088 0.64 -0.1 4,585,671 - MIT1002_04088 0.69 +0.8 4,585,788 + MIT1002_04088 0.73 +0.6 4,585,851 + MIT1002_04088 0.75 +0.6 4,585,868 + MIT1002_04088 0.76 +0.6 4,585,874 + MIT1002_04088 0.76 +0.7 4,585,883 - MIT1002_04088 0.76 +0.0 4,585,893 - MIT1002_04088 0.76 +0.7 4,586,014 - MIT1002_04088 0.81 -0.6 4,586,019 - MIT1002_04088 0.81 -0.1 4,586,072 + MIT1002_04088 0.83 -1.6 4,586,072 + MIT1002_04088 0.83 +1.2 4,586,072 + MIT1002_04088 0.83 -0.0 4,586,102 - MIT1002_04088 0.84 +0.9 4,586,127 + MIT1002_04088 0.84 +0.5 4,586,127 + MIT1002_04088 0.84 +1.0 4,586,134 + MIT1002_04088 0.85 +1.9 4,586,135 - MIT1002_04088 0.85 -0.7 4,586,163 + MIT1002_04088 0.86 -0.4 4,586,184 - MIT1002_04088 0.86 -0.2 4,586,216 - MIT1002_04088 0.87 -0.9 4,586,234 + MIT1002_04088 0.88 +0.5 4,586,335 + -0.9 4,586,369 + +0.9 4,586,406 + +0.8 4,586,465 - +1.4 4,586,476 + -2.3 4,586,525 + -0.3 4,586,525 + -0.9 4,586,536 - +0.3 4,586,538 - +2.7 4,586,538 - +0.2 4,586,616 - +0.2 4,586,663 + -1.1 4,586,777 + +0.4 4,586,777 + -0.5 4,586,785 - +0.2 4,586,811 + -0.6 4,586,811 + +0.5 4,586,819 - +0.5 4,586,831 - -1.2 4,586,831 - -2.3 4,586,973 - +1.0 4,587,015 + MIT1002_04089 0.12 -2.0 4,587,101 + MIT1002_04089 0.17 +0.1 4,587,102 + MIT1002_04089 0.17 +1.8 4,587,112 + MIT1002_04089 0.17 -1.9 4,587,157 - MIT1002_04089 0.20 -2.0 4,587,171 - MIT1002_04089 0.21 -0.5 4,587,184 - MIT1002_04089 0.21 +1.7 4,587,206 + MIT1002_04089 0.23 +0.4 4,587,224 - MIT1002_04089 0.24 +0.6 4,587,231 + MIT1002_04089 0.24 +0.5 4,587,262 - MIT1002_04089 0.26 +1.3 4,587,265 + MIT1002_04089 0.26 +0.9 4,587,283 + MIT1002_04089 0.27 -0.8 4,587,283 + MIT1002_04089 0.27 -1.0 4,587,299 + MIT1002_04089 0.28 -0.5 4,587,299 + MIT1002_04089 0.28 +0.0 4,587,307 - MIT1002_04089 0.28 -0.0 4,587,309 + MIT1002_04089 0.29 +2.0 4,587,309 + MIT1002_04089 0.29 -0.1 4,587,317 - MIT1002_04089 0.29 +1.2 4,587,354 - MIT1002_04089 0.31 -0.5 4,587,397 + MIT1002_04089 0.34 -0.6 4,587,397 + MIT1002_04089 0.34 +1.2 4,587,397 - MIT1002_04089 0.34 -0.2 4,587,466 + MIT1002_04089 0.38 -1.2 4,587,474 - MIT1002_04089 0.38 +2.6 4,587,474 - MIT1002_04089 0.38 -0.4
Or see this region's nucleotide sequence