Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04012

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
4,496,071	+		MIT1002_04010	0.49	-0.7
4,496,077	-		MIT1002_04010	0.51	-2.6
4,496,107	+		MIT1002_04010	0.63	-0.3
4,496,113	-		MIT1002_04010	0.65	-1.6
4,496,113	-		MIT1002_04010	0.65	+1.5
4,496,233	-				-0.3
4,496,358	-				-0.5
4,496,409	-				-0.4
4,496,423	+				-0.5
4,496,431	-				+2.0
4,496,498	-		MIT1002_04011	0.22	-0.0
4,496,504	+		MIT1002_04011	0.23	+0.1
4,496,603	+		MIT1002_04011	0.43	-1.8
4,496,611	-		MIT1002_04011	0.45	+0.3
4,496,697	+		MIT1002_04011	0.63	-0.8
4,496,765	+		MIT1002_04011	0.77	+0.4
4,496,883	+				+1.4
4,496,889	-				-0.8
4,496,891	-				+0.4
4,496,901	-				+0.7
4,496,910	-				-0.7
4,496,985	+				+0.4
4,496,991	-				+0.4
4,496,993	-				-0.9
4,497,162	+				+0.2
4,497,183	+				-1.1
4,497,199	+				-0.3
4,497,207	+				+0.9
4,497,207	+				+1.0
4,497,207	+				-1.0
4,497,215	-				-1.4
4,497,215	-				-1.7
4,497,215	-				-0.2
4,497,215	-				+1.0
4,497,217	+				-0.9
4,497,237	+				-2.1
4,497,245	-				-0.2
4,497,255	+				+0.9
4,497,310	-		MIT1002_04012	0.11	+0.8
4,497,355	-		MIT1002_04012	0.13	+1.0
4,497,408	+		MIT1002_04012	0.15	-0.0
4,497,408	+		MIT1002_04012	0.15	+1.0
4,497,408	+		MIT1002_04012	0.15	-1.0
4,497,417	-		MIT1002_04012	0.15	-1.6
4,497,463	-		MIT1002_04012	0.17	+0.8
4,497,486	-		MIT1002_04012	0.18	+1.0
4,497,515	+		MIT1002_04012	0.20	+1.4
4,497,523	-		MIT1002_04012	0.20	-0.9
4,497,570	-		MIT1002_04012	0.22	-1.0
4,497,634	-		MIT1002_04012	0.25	-0.6
4,497,674	-		MIT1002_04012	0.26	-0.0
4,497,721	+		MIT1002_04012	0.28	-0.3
4,497,765	-		MIT1002_04012	0.30	-1.1
4,497,784	+		MIT1002_04012	0.31	+1.0
4,497,828	+		MIT1002_04012	0.33	+0.7
4,497,920	+		MIT1002_04012	0.37	-0.3
4,497,933	+		MIT1002_04012	0.37	-0.5
4,497,933	+		MIT1002_04012	0.37	+0.7
4,497,933	+		MIT1002_04012	0.37	-1.0
4,497,933	-		MIT1002_04012	0.37	-0.2
4,497,935	+		MIT1002_04012	0.37	+0.6
4,497,941	-		MIT1002_04012	0.38	-0.5
4,497,941	-		MIT1002_04012	0.38	-0.2
4,497,994	+		MIT1002_04012	0.40	+0.2
4,497,994	+		MIT1002_04012	0.40	+1.7
4,497,994	+		MIT1002_04012	0.40	+1.1
4,497,994	+		MIT1002_04012	0.40	-0.0
4,498,002	-		MIT1002_04012	0.40	+0.1
4,498,002	-		MIT1002_04012	0.40	+0.1
4,498,056	+		MIT1002_04012	0.43	+3.7
4,498,070	+		MIT1002_04012	0.43	-0.1
4,498,078	-		MIT1002_04012	0.44	+0.3
4,498,078	-		MIT1002_04012	0.44	+0.9
4,498,078	-		MIT1002_04012	0.44	+0.3
4,498,078	-		MIT1002_04012	0.44	+1.8
4,498,081	-		MIT1002_04012	0.44	+0.2
4,498,083	+		MIT1002_04012	0.44	+0.7
4,498,108	-		MIT1002_04012	0.45	-1.9
4,498,138	+		MIT1002_04012	0.46	+0.5
4,498,146	-		MIT1002_04012	0.46	-0.1
4,498,176	-		MIT1002_04012	0.48	+0.2
4,498,215	-		MIT1002_04012	0.49	-0.2
4,498,217	-		MIT1002_04012	0.49	-0.2
4,498,327	-		MIT1002_04012	0.54	-1.5
4,498,358	+		MIT1002_04012	0.55	-2.2
4,498,366	-		MIT1002_04012	0.56	-0.0
4,498,371	+		MIT1002_04012	0.56	-0.3
4,498,376	+		MIT1002_04012	0.56	-0.2
4,498,395	+		MIT1002_04012	0.57	+1.5
4,498,451	-		MIT1002_04012	0.59	-0.6
4,498,464	+		MIT1002_04012	0.60	+0.1
4,498,505	+		MIT1002_04012	0.62	-0.8
4,498,505	+		MIT1002_04012	0.62	+0.1
4,498,505	+		MIT1002_04012	0.62	-1.1
4,498,513	-		MIT1002_04012	0.62	-0.4
4,498,513	-		MIT1002_04012	0.62	-0.8
4,498,513	-		MIT1002_04012	0.62	+0.5
4,498,513	-		MIT1002_04012	0.62	-1.0
4,498,513	-		MIT1002_04012	0.62	-0.1
4,498,523	+		MIT1002_04012	0.62	+0.5
4,498,523	-		MIT1002_04012	0.62	-0.4
4,498,523	-		MIT1002_04012	0.62	-1.6
4,498,535	+		MIT1002_04012	0.63	+0.4
4,498,535	+		MIT1002_04012	0.63	+0.4
4,498,537	+		MIT1002_04012	0.63	-0.8
4,498,537	+		MIT1002_04012	0.63	-0.5
4,498,561	+		MIT1002_04012	0.64	+1.2
4,498,569	-		MIT1002_04012	0.64	-1.0
4,498,621	+		MIT1002_04012	0.67	-0.5
4,498,642	+		MIT1002_04012	0.68	+0.8
4,498,654	+		MIT1002_04012	0.68	-1.2
4,498,654	+		MIT1002_04012	0.68	-2.2
4,498,662	-		MIT1002_04012	0.68	-2.6
4,498,683	-		MIT1002_04012	0.69	+0.8
4,498,722	+		MIT1002_04012	0.71	+0.5
4,498,733	+		MIT1002_04012	0.71	-0.0
4,498,761	-		MIT1002_04012	0.73	+0.0
4,498,807	-		MIT1002_04012	0.75	+0.0
4,498,857	+		MIT1002_04012	0.77	-0.3
4,498,864	-		MIT1002_04012	0.77	-2.8
4,498,889	+		MIT1002_04012	0.78	+0.8
4,499,012	+		MIT1002_04012	0.83	+0.1
4,499,066	-		MIT1002_04012	0.86	-0.0
4,499,093	-		MIT1002_04012	0.87	-1.2
4,499,109	+		MIT1002_04012	0.87	-0.2
4,499,136	-		MIT1002_04012	0.89	-0.0
4,499,185	+				-2.3
4,499,222	+				-0.4
4,499,242	+				-0.5
4,499,269	+				-1.2
4,499,278	+				-0.1
4,499,282	+				-0.9
4,499,323	-				-0.8
4,499,345	+				-0.2
4,499,345	+				-0.5
4,499,345	+				+0.5
4,499,353	-				-0.4
4,499,365	-				+0.5
4,499,455	+				+0.2
4,499,457	-				+0.3
4,499,457	-				-0.5
4,499,489	-				+0.6
4,499,605	+				+0.8
4,499,614	-				-0.5
4,499,668	+				+0.9
4,499,754	+				+0.2
4,499,772	-				+0.3
4,499,779	-				-1.7
4,499,824	+				+0.3
4,499,832	-				+0.2
4,500,058	+		MIT1002_04013	0.12	+0.4
4,500,082	-		MIT1002_04013	0.14	+0.1
4,500,119	-		MIT1002_04013	0.16	+0.2
4,500,120	+		MIT1002_04013	0.16	+0.5
4,500,135	-		MIT1002_04013	0.17	-0.3
4,500,158	+		MIT1002_04013	0.18	-1.0
4,500,161	-		MIT1002_04013	0.18	-0.0
4,500,166	-		MIT1002_04013	0.18	+1.4
4,500,275	-		MIT1002_04013	0.24	-0.8
4,500,277	-		MIT1002_04013	0.25	+0.3
4,500,282	-		MIT1002_04013	0.25	-0.0
4,500,309	+		MIT1002_04013	0.26	-0.3
4,500,366	-		MIT1002_04013	0.30	+0.1
4,500,389	-		MIT1002_04013	0.31	+1.1
4,500,396	-		MIT1002_04013	0.31	+0.7
4,500,402	+		MIT1002_04013	0.32	-1.4
4,500,402	-		MIT1002_04013	0.32	+1.5