Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03989

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
4,475,148	+		MIT1002_03988	0.30	-0.1
4,475,161	-		MIT1002_03988	0.31	-0.5
4,475,162	-		MIT1002_03988	0.32	-0.5
4,475,174	+		MIT1002_03988	0.33	-0.6
4,475,187	-		MIT1002_03988	0.34	-0.7
4,475,219	-		MIT1002_03988	0.37	-0.9
4,475,230	-		MIT1002_03988	0.38	+0.5
4,475,302	+		MIT1002_03988	0.45	-0.2
4,475,302	+		MIT1002_03988	0.45	-0.7
4,475,310	-		MIT1002_03988	0.46	+2.2
4,475,361	+		MIT1002_03988	0.50	-1.1
4,475,361	+		MIT1002_03988	0.50	-0.6
4,475,380	+		MIT1002_03988	0.52	-0.9
4,475,388	-		MIT1002_03988	0.53	-1.6
4,475,388	-		MIT1002_03988	0.53	+0.2
4,475,388	-		MIT1002_03988	0.53	-3.8
4,475,388	-		MIT1002_03988	0.53	-0.9
4,475,388	-		MIT1002_03988	0.53	-0.8
4,475,611	+		MIT1002_03988	0.74	+1.2
4,475,678	-		MIT1002_03988	0.80	-1.8
4,475,681	+		MIT1002_03988	0.81	-0.1
4,475,701	+		MIT1002_03988	0.83	+1.1
4,475,709	-		MIT1002_03988	0.83	+1.5
4,475,764	+		MIT1002_03988	0.89	-0.3
4,475,811	-				-0.0
4,475,905	-				-2.1
4,475,922	-				-0.7
4,475,967	-				-1.0
4,476,033	+				+1.4
4,476,111	+				+1.9
4,476,119	-				+0.0
4,476,173	+				+2.2
4,476,180	+				+1.0
4,476,188	-				+0.3
4,476,195	-				+0.9
4,476,195	-				-1.0
4,476,238	-				+0.1
4,476,251	-				-0.5
4,476,316	-		MIT1002_03989	0.14	+0.7
4,476,318	+		MIT1002_03989	0.15	+0.5
4,476,326	-		MIT1002_03989	0.15	-0.6
4,476,326	-		MIT1002_03989	0.15	-1.5
4,476,341	+		MIT1002_03989	0.16	+0.2
4,476,411	+		MIT1002_03989	0.21	+1.6
4,476,683	+		MIT1002_03989	0.41	-0.8
4,476,724	-		MIT1002_03989	0.44	-0.2
4,476,790	-		MIT1002_03989	0.49	+0.0
4,476,810	-		MIT1002_03989	0.50	+0.4
4,476,825	-		MIT1002_03989	0.51	+1.3
4,476,861	+		MIT1002_03989	0.54	+1.4
4,476,861	+		MIT1002_03989	0.54	-0.6
4,476,889	+		MIT1002_03989	0.56	+2.7
4,477,004	+		MIT1002_03989	0.64	+0.7
4,477,052	-		MIT1002_03989	0.67	-0.9
4,477,089	+		MIT1002_03989	0.70	+0.2
4,477,147	-		MIT1002_03989	0.74	+1.0
4,477,213	-		MIT1002_03989	0.79	-0.6
4,477,249	-		MIT1002_03989	0.82	-0.4
4,477,281	-		MIT1002_03989	0.84	-1.6
4,477,298	-		MIT1002_03989	0.85	+1.1
4,477,369	-				-0.4
4,477,510	-				+0.5
4,477,610	-				-0.1
4,477,616	+				+0.4
4,477,719	+				-0.6
4,477,748	+				-1.9
4,477,748	+				+0.1
4,477,768	+				-0.2
4,477,768	+				-0.6
4,477,776	-				-1.1
4,477,777	+				+1.3
4,477,785	-				+0.3
4,477,785	-				-0.3
4,477,785	-				-0.2
4,477,838	-				-1.1
4,477,866	+		MIT1002_03990	0.15	+0.2
4,477,954	+		MIT1002_03990	0.31	+0.1
4,477,957	-		MIT1002_03990	0.32	+0.3
4,477,973	+		MIT1002_03990	0.34	-0.3
4,478,005	-		MIT1002_03990	0.40	-0.0
4,478,026	+		MIT1002_03990	0.44	+0.4
4,478,049	+		MIT1002_03990	0.48	-1.5
4,478,076	-		MIT1002_03990	0.53	-2.7
4,478,086	-		MIT1002_03990	0.55	+0.1
4,478,088	+		MIT1002_03990	0.55	+0.5
4,478,114	+		MIT1002_03990	0.60	-0.5
4,478,114	-		MIT1002_03990	0.60	+0.6
4,478,125	+		MIT1002_03990	0.62	-0.0
4,478,140	+		MIT1002_03990	0.65	+1.7
4,478,198	+		MIT1002_03990	0.76	-0.6
4,478,211	+		MIT1002_03990	0.78	+2.1
4,478,216	+		MIT1002_03990	0.79	-0.5
4,478,221	+		MIT1002_03990	0.80	+0.3
4,478,221	+		MIT1002_03990	0.80	-0.8
4,478,221	+		MIT1002_03990	0.80	+0.8
4,478,221	+		MIT1002_03990	0.80	-1.3
4,478,221	+		MIT1002_03990	0.80	+0.5
4,478,221	+		MIT1002_03990	0.80	+0.5
4,478,221	+		MIT1002_03990	0.80	+0.3
4,478,221	+		MIT1002_03990	0.80	+0.1
4,478,221	+		MIT1002_03990	0.80	+0.4
4,478,221	+		MIT1002_03990	0.80	-1.4
4,478,221	+		MIT1002_03990	0.80	+0.3
4,478,221	+		MIT1002_03990	0.80	-2.9
4,478,221	+		MIT1002_03990	0.80	+2.0
4,478,221	+		MIT1002_03990	0.80	-0.7
4,478,221	+		MIT1002_03990	0.80	+0.4
4,478,229	-		MIT1002_03990	0.81	+0.0
4,478,229	-		MIT1002_03990	0.81	+1.0
4,478,229	-		MIT1002_03990	0.81	+0.5
4,478,229	-		MIT1002_03990	0.81	-0.1
4,478,229	-		MIT1002_03990	0.81	-0.3
4,478,229	-		MIT1002_03990	0.81	-1.0
4,478,229	-		MIT1002_03990	0.81	+1.4
4,478,229	-		MIT1002_03990	0.81	+0.2
4,478,229	-		MIT1002_03990	0.81	-0.6
4,478,229	-		MIT1002_03990	0.81	-0.6
4,478,229	-		MIT1002_03990	0.81	+0.1
4,478,229	-		MIT1002_03990	0.81	+1.8
4,478,229	-		MIT1002_03990	0.81	-0.2
4,478,229	-		MIT1002_03990	0.81	+1.2
4,478,257	-		MIT1002_03990	0.86	+0.6
4,478,271	-		MIT1002_03990	0.89	+0.5
4,478,286	-				-1.4
4,478,379	+				+0.4
4,478,386	-				+0.7
4,478,433	+		MIT1002_03991	0.11	+0.3
4,478,433	+		MIT1002_03991	0.11	+0.5
4,478,469	+		MIT1002_03991	0.16	+0.7