Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03984 and MIT1002_03985 overlap by 4 nucleotides MIT1002_03985 and MIT1002_03986 overlap by 4 nucleotides MIT1002_03986 and MIT1002_03987 are separated by 99 nucleotides
MIT1002_03984: MIT1002_03984 - General secretion pathway protein L, at 4,470,810 to 4,472,009
_03984
MIT1002_03985: MIT1002_03985 - General secretion pathway protein M, at 4,472,006 to 4,472,485
_03985
MIT1002_03986: MIT1002_03986 - Pectic enzymes secretion protein OutN, at 4,472,482 to 4,473,237
_03986
MIT1002_03987: MIT1002_03987 - hypothetical protein, at 4,473,337 to 4,474,770
_03987
Position (kb) 4472
4473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4471.024 kb on - strand, within MIT1002_03984 at 4471.108 kb on + strand, within MIT1002_03984 at 4471.116 kb on - strand, within MIT1002_03984 at 4471.133 kb on - strand, within MIT1002_03984 at 4471.148 kb on - strand, within MIT1002_03984 at 4471.305 kb on + strand, within MIT1002_03984 at 4471.449 kb on - strand, within MIT1002_03984 at 4471.479 kb on + strand, within MIT1002_03984 at 4471.497 kb on - strand, within MIT1002_03984 at 4471.617 kb on - strand, within MIT1002_03984 at 4471.666 kb on - strand, within MIT1002_03984 at 4471.780 kb on + strand, within MIT1002_03984 at 4471.977 kb on + strand at 4471.996 kb on + strand at 4472.005 kb on - strand at 4472.065 kb on + strand, within MIT1002_03985 at 4472.073 kb on - strand, within MIT1002_03985 at 4472.129 kb on + strand, within MIT1002_03985 at 4472.262 kb on - strand, within MIT1002_03985 at 4472.272 kb on + strand, within MIT1002_03985 at 4472.285 kb on - strand, within MIT1002_03985 at 4472.330 kb on + strand, within MIT1002_03985 at 4472.335 kb on + strand, within MIT1002_03985 at 4472.377 kb on + strand, within MIT1002_03985 at 4472.385 kb on - strand, within MIT1002_03985 at 4472.468 kb on + strand at 4472.476 kb on - strand at 4472.509 kb on - strand at 4472.540 kb on - strand at 4472.635 kb on + strand, within MIT1002_03986 at 4472.642 kb on + strand, within MIT1002_03986 at 4472.661 kb on + strand, within MIT1002_03986 at 4472.727 kb on + strand, within MIT1002_03986 at 4472.727 kb on + strand, within MIT1002_03986 at 4472.727 kb on + strand, within MIT1002_03986 at 4472.752 kb on + strand, within MIT1002_03986 at 4472.775 kb on + strand, within MIT1002_03986 at 4472.798 kb on + strand, within MIT1002_03986 at 4472.832 kb on + strand, within MIT1002_03986 at 4472.832 kb on + strand, within MIT1002_03986 at 4472.877 kb on + strand, within MIT1002_03986 at 4472.933 kb on - strand, within MIT1002_03986 at 4472.954 kb on + strand, within MIT1002_03986 at 4473.027 kb on + strand, within MIT1002_03986 at 4473.068 kb on + strand, within MIT1002_03986 at 4473.069 kb on + strand, within MIT1002_03986 at 4473.102 kb on + strand, within MIT1002_03986 at 4473.161 kb on - strand, within MIT1002_03986 at 4473.187 kb on + strand at 4473.215 kb on + strand at 4473.364 kb on + strand at 4473.387 kb on - strand at 4473.415 kb on - strand at 4473.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 4,471,024 - MIT1002_03984 0.18 -0.0 4,471,108 + MIT1002_03984 0.25 -1.2 4,471,116 - MIT1002_03984 0.26 -0.6 4,471,133 - MIT1002_03984 0.27 -0.8 4,471,148 - MIT1002_03984 0.28 -0.3 4,471,305 + MIT1002_03984 0.41 -2.5 4,471,449 - MIT1002_03984 0.53 -0.6 4,471,479 + MIT1002_03984 0.56 -0.8 4,471,497 - MIT1002_03984 0.57 -0.3 4,471,617 - MIT1002_03984 0.67 -0.6 4,471,666 - MIT1002_03984 0.71 -0.0 4,471,780 + MIT1002_03984 0.81 -0.3 4,471,977 + -0.9 4,471,996 + +0.8 4,472,005 - -0.3 4,472,065 + MIT1002_03985 0.12 -0.6 4,472,073 - MIT1002_03985 0.14 -0.3 4,472,129 + MIT1002_03985 0.26 -0.0 4,472,262 - MIT1002_03985 0.53 -0.3 4,472,272 + MIT1002_03985 0.55 -1.8 4,472,285 - MIT1002_03985 0.58 -3.3 4,472,330 + MIT1002_03985 0.68 -2.4 4,472,335 + MIT1002_03985 0.69 -1.2 4,472,377 + MIT1002_03985 0.77 -2.8 4,472,385 - MIT1002_03985 0.79 -0.0 4,472,468 + +0.4 4,472,476 - +0.3 4,472,509 - -0.9 4,472,540 - -1.5 4,472,635 + MIT1002_03986 0.20 +0.6 4,472,642 + MIT1002_03986 0.21 +1.2 4,472,661 + MIT1002_03986 0.24 +0.9 4,472,727 + MIT1002_03986 0.32 -0.0 4,472,727 + MIT1002_03986 0.32 -0.8 4,472,727 + MIT1002_03986 0.32 -0.2 4,472,752 + MIT1002_03986 0.36 -0.1 4,472,775 + MIT1002_03986 0.39 +0.8 4,472,798 + MIT1002_03986 0.42 +0.3 4,472,832 + MIT1002_03986 0.46 -0.6 4,472,832 + MIT1002_03986 0.46 -0.4 4,472,877 + MIT1002_03986 0.52 +1.2 4,472,933 - MIT1002_03986 0.60 -0.7 4,472,954 + MIT1002_03986 0.62 -1.2 4,473,027 + MIT1002_03986 0.72 +0.1 4,473,068 + MIT1002_03986 0.78 +0.8 4,473,069 + MIT1002_03986 0.78 +2.2 4,473,102 + MIT1002_03986 0.82 -0.3 4,473,161 - MIT1002_03986 0.90 -3.0 4,473,187 + +1.1 4,473,215 + +0.5 4,473,364 + +0.9 4,473,387 - +1.0 4,473,415 - +0.5 4,473,460 + +0.4
Or see this region's nucleotide sequence