Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03981 and MIT1002_03982 are separated by 1 nucleotides MIT1002_03982 and MIT1002_03983 overlap by 4 nucleotides MIT1002_03983 and MIT1002_03984 overlap by 1 nucleotides
MIT1002_03981: MIT1002_03981 - Putative general secretion pathway protein I, at 4,468,711 to 4,469,139
_03981
MIT1002_03982: MIT1002_03982 - PilD-dependent protein PddD, at 4,469,141 to 4,469,767
_03982
MIT1002_03983: MIT1002_03983 - Putative general secretion pathway protein K, at 4,469,764 to 4,470,810
_03983
MIT1002_03984: MIT1002_03984 - General secretion pathway protein L, at 4,470,810 to 4,472,009
_03984
Position (kb) 4469
4470
4471 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4468.839 kb on + strand, within MIT1002_03981 at 4468.847 kb on - strand, within MIT1002_03981 at 4468.847 kb on - strand, within MIT1002_03981 at 4468.954 kb on + strand, within MIT1002_03981 at 4469.221 kb on + strand, within MIT1002_03982 at 4469.344 kb on + strand, within MIT1002_03982 at 4469.463 kb on + strand, within MIT1002_03982 at 4469.465 kb on + strand, within MIT1002_03982 at 4469.520 kb on - strand, within MIT1002_03982 at 4469.530 kb on + strand, within MIT1002_03982 at 4469.577 kb on - strand, within MIT1002_03982 at 4469.769 kb on + strand at 4469.838 kb on + strand at 4469.943 kb on + strand, within MIT1002_03983 at 4470.090 kb on - strand, within MIT1002_03983 at 4470.204 kb on - strand, within MIT1002_03983 at 4470.225 kb on - strand, within MIT1002_03983 at 4470.242 kb on + strand, within MIT1002_03983 at 4470.315 kb on + strand, within MIT1002_03983 at 4470.323 kb on + strand, within MIT1002_03983 at 4470.323 kb on - strand, within MIT1002_03983 at 4470.416 kb on + strand, within MIT1002_03983 at 4470.637 kb on - strand, within MIT1002_03983 at 4470.720 kb on - strand at 4470.736 kb on - strand at 4470.754 kb on - strand at 4470.911 kb on + strand at 4470.919 kb on - strand at 4470.931 kb on - strand, within MIT1002_03984 at 4470.951 kb on + strand, within MIT1002_03984 at 4470.971 kb on - strand, within MIT1002_03984 at 4471.003 kb on + strand, within MIT1002_03984 at 4471.024 kb on - strand, within MIT1002_03984 at 4471.108 kb on + strand, within MIT1002_03984 at 4471.116 kb on - strand, within MIT1002_03984 at 4471.133 kb on - strand, within MIT1002_03984 at 4471.148 kb on - strand, within MIT1002_03984 at 4471.305 kb on + strand, within MIT1002_03984 at 4471.449 kb on - strand, within MIT1002_03984 at 4471.479 kb on + strand, within MIT1002_03984 at 4471.497 kb on - strand, within MIT1002_03984 at 4471.617 kb on - strand, within MIT1002_03984 at 4471.666 kb on - strand, within MIT1002_03984 at 4471.780 kb on + strand, within MIT1002_03984
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 4,468,839 + MIT1002_03981 0.30 -0.6 4,468,847 - MIT1002_03981 0.32 -0.6 4,468,847 - MIT1002_03981 0.32 -3.4 4,468,954 + MIT1002_03981 0.57 -1.2 4,469,221 + MIT1002_03982 0.13 -3.1 4,469,344 + MIT1002_03982 0.32 -1.0 4,469,463 + MIT1002_03982 0.51 -4.3 4,469,465 + MIT1002_03982 0.52 -1.0 4,469,520 - MIT1002_03982 0.60 -1.0 4,469,530 + MIT1002_03982 0.62 -0.0 4,469,577 - MIT1002_03982 0.70 -0.0 4,469,769 + -1.6 4,469,838 + -0.0 4,469,943 + MIT1002_03983 0.17 -0.0 4,470,090 - MIT1002_03983 0.31 -1.3 4,470,204 - MIT1002_03983 0.42 -1.0 4,470,225 - MIT1002_03983 0.44 -0.6 4,470,242 + MIT1002_03983 0.46 -0.3 4,470,315 + MIT1002_03983 0.53 -4.4 4,470,323 + MIT1002_03983 0.53 -0.3 4,470,323 - MIT1002_03983 0.53 -1.7 4,470,416 + MIT1002_03983 0.62 -0.0 4,470,637 - MIT1002_03983 0.83 -2.3 4,470,720 - -2.3 4,470,736 - -1.6 4,470,754 - -0.6 4,470,911 + -0.3 4,470,919 - -2.5 4,470,931 - MIT1002_03984 0.10 -1.2 4,470,951 + MIT1002_03984 0.12 -3.6 4,470,971 - MIT1002_03984 0.13 -0.0 4,471,003 + MIT1002_03984 0.16 -0.0 4,471,024 - MIT1002_03984 0.18 -0.0 4,471,108 + MIT1002_03984 0.25 -1.2 4,471,116 - MIT1002_03984 0.26 -0.6 4,471,133 - MIT1002_03984 0.27 -0.8 4,471,148 - MIT1002_03984 0.28 -0.3 4,471,305 + MIT1002_03984 0.41 -2.5 4,471,449 - MIT1002_03984 0.53 -0.6 4,471,479 + MIT1002_03984 0.56 -0.8 4,471,497 - MIT1002_03984 0.57 -0.3 4,471,617 - MIT1002_03984 0.67 -0.6 4,471,666 - MIT1002_03984 0.71 -0.0 4,471,780 + MIT1002_03984 0.81 -0.3
Or see this region's nucleotide sequence