Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03821 and MIT1002_03822 are separated by 129 nucleotides MIT1002_03822 and MIT1002_03823 are separated by 156 nucleotides
MIT1002_03821: MIT1002_03821 - acidobacterial duplicated orphan permease, at 4,268,393 to 4,269,718
_03821
MIT1002_03822: MIT1002_03822 - Aerotaxis receptor, at 4,269,848 to 4,271,419
_03822
MIT1002_03823: MIT1002_03823 - Sporulation kinase E, at 4,271,576 to 4,273,081
_03823
Position (kb) 4269
4270
4271
4272 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.891 kb on + strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.899 kb on - strand, within MIT1002_03821 at 4268.906 kb on + strand, within MIT1002_03821 at 4268.937 kb on - strand, within MIT1002_03821 at 4268.954 kb on + strand, within MIT1002_03821 at 4268.989 kb on - strand, within MIT1002_03821 at 4268.989 kb on - strand, within MIT1002_03821 at 4268.994 kb on + strand, within MIT1002_03821 at 4269.001 kb on - strand, within MIT1002_03821 at 4269.013 kb on + strand, within MIT1002_03821 at 4269.027 kb on - strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.042 kb on + strand, within MIT1002_03821 at 4269.050 kb on - strand, within MIT1002_03821 at 4269.050 kb on - strand, within MIT1002_03821 at 4269.050 kb on - strand, within MIT1002_03821 at 4269.140 kb on + strand, within MIT1002_03821 at 4269.148 kb on - strand, within MIT1002_03821 at 4269.148 kb on - strand, within MIT1002_03821 at 4269.179 kb on + strand, within MIT1002_03821 at 4269.195 kb on - strand, within MIT1002_03821 at 4269.362 kb on + strand, within MIT1002_03821 at 4269.375 kb on + strand, within MIT1002_03821 at 4269.446 kb on + strand, within MIT1002_03821 at 4269.454 kb on - strand, within MIT1002_03821 at 4269.472 kb on + strand, within MIT1002_03821 at 4269.501 kb on + strand, within MIT1002_03821 at 4269.521 kb on - strand, within MIT1002_03821 at 4269.551 kb on - strand, within MIT1002_03821 at 4269.551 kb on - strand, within MIT1002_03821 at 4269.586 kb on - strand at 4269.634 kb on + strand at 4269.664 kb on - strand at 4269.712 kb on + strand at 4269.775 kb on - strand at 4269.821 kb on + strand at 4269.841 kb on - strand at 4269.841 kb on - strand at 4269.853 kb on + strand at 4269.897 kb on - strand at 4269.931 kb on + strand at 4269.985 kb on + strand at 4269.993 kb on - strand at 4270.031 kb on + strand, within MIT1002_03822 at 4270.031 kb on + strand, within MIT1002_03822 at 4270.043 kb on + strand, within MIT1002_03822 at 4270.049 kb on + strand, within MIT1002_03822 at 4270.063 kb on - strand, within MIT1002_03822 at 4270.115 kb on + strand, within MIT1002_03822 at 4270.131 kb on - strand, within MIT1002_03822 at 4270.143 kb on + strand, within MIT1002_03822 at 4270.305 kb on + strand, within MIT1002_03822 at 4270.391 kb on + strand, within MIT1002_03822 at 4270.393 kb on - strand, within MIT1002_03822 at 4270.451 kb on + strand, within MIT1002_03822 at 4270.490 kb on - strand, within MIT1002_03822 at 4270.500 kb on + strand, within MIT1002_03822 at 4270.606 kb on - strand, within MIT1002_03822 at 4270.674 kb on - strand, within MIT1002_03822 at 4270.688 kb on + strand, within MIT1002_03822 at 4270.688 kb on + strand, within MIT1002_03822 at 4270.688 kb on + strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.696 kb on - strand, within MIT1002_03822 at 4270.714 kb on + strand, within MIT1002_03822 at 4270.714 kb on + strand, within MIT1002_03822 at 4270.722 kb on - strand, within MIT1002_03822 at 4270.726 kb on + strand, within MIT1002_03822 at 4270.777 kb on - strand, within MIT1002_03822 at 4270.859 kb on + strand, within MIT1002_03822 at 4270.880 kb on - strand, within MIT1002_03822 at 4270.880 kb on - strand, within MIT1002_03822 at 4270.880 kb on - strand, within MIT1002_03822 at 4270.890 kb on - strand, within MIT1002_03822 at 4270.973 kb on + strand, within MIT1002_03822 at 4270.973 kb on + strand, within MIT1002_03822 at 4271.035 kb on + strand, within MIT1002_03822 at 4271.060 kb on + strand, within MIT1002_03822 at 4271.090 kb on + strand, within MIT1002_03822 at 4271.136 kb on + strand, within MIT1002_03822 at 4271.235 kb on + strand, within MIT1002_03822 at 4271.296 kb on - strand at 4271.327 kb on - strand at 4271.329 kb on + strand at 4271.337 kb on - strand at 4271.337 kb on - strand at 4271.381 kb on + strand at 4271.389 kb on - strand at 4271.397 kb on - strand at 4271.494 kb on - strand at 4271.562 kb on - strand at 4271.620 kb on - strand at 4271.620 kb on - strand at 4271.659 kb on - strand at 4271.686 kb on + strand at 4271.733 kb on + strand, within MIT1002_03823 at 4271.759 kb on + strand, within MIT1002_03823 at 4271.759 kb on + strand, within MIT1002_03823 at 4271.766 kb on - strand, within MIT1002_03823 at 4271.820 kb on + strand, within MIT1002_03823 at 4271.906 kb on + strand, within MIT1002_03823 at 4271.970 kb on - strand, within MIT1002_03823 at 4271.981 kb on - strand, within MIT1002_03823 at 4272.136 kb on - strand, within MIT1002_03823 at 4272.156 kb on + strand, within MIT1002_03823 at 4272.258 kb on + strand, within MIT1002_03823 at 4272.264 kb on + strand, within MIT1002_03823 at 4272.342 kb on + strand, within MIT1002_03823 at 4272.345 kb on - strand, within MIT1002_03823
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 4,268,891 + MIT1002_03821 0.38 +0.5 4,268,891 + MIT1002_03821 0.38 +0.2 4,268,891 + MIT1002_03821 0.38 -2.8 4,268,891 + MIT1002_03821 0.38 +0.3 4,268,891 + MIT1002_03821 0.38 +1.6 4,268,891 + MIT1002_03821 0.38 -0.4 4,268,899 - MIT1002_03821 0.38 +0.6 4,268,899 - MIT1002_03821 0.38 +0.4 4,268,899 - MIT1002_03821 0.38 -0.9 4,268,899 - MIT1002_03821 0.38 +1.2 4,268,899 - MIT1002_03821 0.38 -1.1 4,268,899 - MIT1002_03821 0.38 +0.4 4,268,899 - MIT1002_03821 0.38 -0.1 4,268,899 - MIT1002_03821 0.38 +0.6 4,268,899 - MIT1002_03821 0.38 -0.3 4,268,899 - MIT1002_03821 0.38 -1.7 4,268,899 - MIT1002_03821 0.38 +0.2 4,268,906 + MIT1002_03821 0.39 -0.5 4,268,937 - MIT1002_03821 0.41 -0.8 4,268,954 + MIT1002_03821 0.42 -1.4 4,268,989 - MIT1002_03821 0.45 -0.1 4,268,989 - MIT1002_03821 0.45 -1.3 4,268,994 + MIT1002_03821 0.45 -0.1 4,269,001 - MIT1002_03821 0.46 -0.0 4,269,013 + MIT1002_03821 0.47 +1.1 4,269,027 - MIT1002_03821 0.48 +0.7 4,269,042 + MIT1002_03821 0.49 -1.8 4,269,042 + MIT1002_03821 0.49 -0.4 4,269,042 + MIT1002_03821 0.49 -0.7 4,269,042 + MIT1002_03821 0.49 -0.2 4,269,042 + MIT1002_03821 0.49 +0.7 4,269,042 + MIT1002_03821 0.49 -2.1 4,269,042 + MIT1002_03821 0.49 +0.2 4,269,042 + MIT1002_03821 0.49 -0.2 4,269,042 + MIT1002_03821 0.49 -0.6 4,269,050 - MIT1002_03821 0.50 +0.8 4,269,050 - MIT1002_03821 0.50 -0.3 4,269,050 - MIT1002_03821 0.50 -1.7 4,269,140 + MIT1002_03821 0.56 +0.1 4,269,148 - MIT1002_03821 0.57 +1.5 4,269,148 - MIT1002_03821 0.57 -0.6 4,269,179 + MIT1002_03821 0.59 -1.0 4,269,195 - MIT1002_03821 0.60 -0.5 4,269,362 + MIT1002_03821 0.73 +0.6 4,269,375 + MIT1002_03821 0.74 -0.7 4,269,446 + MIT1002_03821 0.79 -0.5 4,269,454 - MIT1002_03821 0.80 -1.4 4,269,472 + MIT1002_03821 0.81 -0.2 4,269,501 + MIT1002_03821 0.84 -1.0 4,269,521 - MIT1002_03821 0.85 -0.7 4,269,551 - MIT1002_03821 0.87 -0.3 4,269,551 - MIT1002_03821 0.87 -0.6 4,269,586 - +0.1 4,269,634 + -0.3 4,269,664 - -1.5 4,269,712 + +0.8 4,269,775 - +0.6 4,269,821 + -0.4 4,269,841 - -1.3 4,269,841 - +0.4 4,269,853 + -1.8 4,269,897 - +0.4 4,269,931 + +0.6 4,269,985 + -2.0 4,269,993 - -0.3 4,270,031 + MIT1002_03822 0.12 +1.0 4,270,031 + MIT1002_03822 0.12 +1.7 4,270,043 + MIT1002_03822 0.12 -0.9 4,270,049 + MIT1002_03822 0.13 -0.4 4,270,063 - MIT1002_03822 0.14 +0.6 4,270,115 + MIT1002_03822 0.17 +1.0 4,270,131 - MIT1002_03822 0.18 +0.2 4,270,143 + MIT1002_03822 0.19 +0.0 4,270,305 + MIT1002_03822 0.29 -0.6 4,270,391 + MIT1002_03822 0.35 -0.2 4,270,393 - MIT1002_03822 0.35 -2.4 4,270,451 + MIT1002_03822 0.38 -0.0 4,270,490 - MIT1002_03822 0.41 +0.1 4,270,500 + MIT1002_03822 0.41 -0.1 4,270,606 - MIT1002_03822 0.48 +0.0 4,270,674 - MIT1002_03822 0.53 +1.6 4,270,688 + MIT1002_03822 0.53 +1.0 4,270,688 + MIT1002_03822 0.53 +1.0 4,270,688 + MIT1002_03822 0.53 +1.1 4,270,696 - MIT1002_03822 0.54 -0.3 4,270,696 - MIT1002_03822 0.54 -0.5 4,270,696 - MIT1002_03822 0.54 +0.2 4,270,696 - MIT1002_03822 0.54 -0.0 4,270,714 + MIT1002_03822 0.55 +0.2 4,270,714 + MIT1002_03822 0.55 -0.2 4,270,722 - MIT1002_03822 0.56 -1.1 4,270,726 + MIT1002_03822 0.56 +0.5 4,270,777 - MIT1002_03822 0.59 -1.0 4,270,859 + MIT1002_03822 0.64 +0.1 4,270,880 - MIT1002_03822 0.66 -0.6 4,270,880 - MIT1002_03822 0.66 -0.0 4,270,880 - MIT1002_03822 0.66 -1.2 4,270,890 - MIT1002_03822 0.66 -0.6 4,270,973 + MIT1002_03822 0.72 -0.5 4,270,973 + MIT1002_03822 0.72 +0.1 4,271,035 + MIT1002_03822 0.76 +0.1 4,271,060 + MIT1002_03822 0.77 -0.3 4,271,090 + MIT1002_03822 0.79 -0.5 4,271,136 + MIT1002_03822 0.82 +0.4 4,271,235 + MIT1002_03822 0.88 -1.0 4,271,296 - +0.2 4,271,327 - -0.6 4,271,329 + -0.6 4,271,337 - +0.1 4,271,337 - +1.7 4,271,381 + +0.4 4,271,389 - +0.3 4,271,397 - +0.1 4,271,494 - +1.6 4,271,562 - +0.7 4,271,620 - -0.4 4,271,620 - -1.4 4,271,659 - +0.6 4,271,686 + -1.1 4,271,733 + MIT1002_03823 0.10 +0.7 4,271,759 + MIT1002_03823 0.12 -0.8 4,271,759 + MIT1002_03823 0.12 +0.3 4,271,766 - MIT1002_03823 0.13 +0.1 4,271,820 + MIT1002_03823 0.16 +1.2 4,271,906 + MIT1002_03823 0.22 -2.9 4,271,970 - MIT1002_03823 0.26 -0.3 4,271,981 - MIT1002_03823 0.27 -1.4 4,272,136 - MIT1002_03823 0.37 +0.6 4,272,156 + MIT1002_03823 0.39 -0.4 4,272,258 + MIT1002_03823 0.45 -1.1 4,272,264 + MIT1002_03823 0.46 -1.6 4,272,342 + MIT1002_03823 0.51 +1.0 4,272,345 - MIT1002_03823 0.51 +0.4
Or see this region's nucleotide sequence