Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03798 and MIT1002_03799 are separated by 35 nucleotides MIT1002_03799 and MIT1002_03800 overlap by 11 nucleotides MIT1002_03800 and MIT1002_03801 are separated by 187 nucleotides MIT1002_03801 and MIT1002_03802 are separated by 101 nucleotides
MIT1002_03798: MIT1002_03798 - Regulator of sigma D, at 4,245,810 to 4,246,274
_03798
MIT1002_03799: MIT1002_03799 - Zinc uptake regulation protein, at 4,246,310 to 4,246,783
_03799
MIT1002_03800: MIT1002_03800 - hypothetical protein, at 4,246,773 to 4,247,237
_03800
MIT1002_03801: MIT1002_03801 - secondary thiamine-phosphate synthase enzyme, at 4,247,425 to 4,247,664
_03801
MIT1002_03802: MIT1002_03802 - Outer membrane porin F precursor, at 4,247,766 to 4,248,962
_03802
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.773 kb on - strand at 4245.821 kb on + strand at 4245.882 kb on - strand, within MIT1002_03798 at 4245.882 kb on - strand, within MIT1002_03798 at 4245.886 kb on + strand, within MIT1002_03798 at 4245.886 kb on + strand, within MIT1002_03798 at 4245.886 kb on + strand, within MIT1002_03798 at 4245.929 kb on - strand, within MIT1002_03798 at 4245.941 kb on + strand, within MIT1002_03798 at 4245.949 kb on - strand, within MIT1002_03798 at 4245.949 kb on - strand, within MIT1002_03798 at 4245.989 kb on - strand, within MIT1002_03798 at 4246.040 kb on - strand, within MIT1002_03798 at 4246.064 kb on + strand, within MIT1002_03798 at 4246.085 kb on + strand, within MIT1002_03798 at 4246.178 kb on - strand, within MIT1002_03798 at 4246.192 kb on + strand, within MIT1002_03798 at 4246.192 kb on + strand, within MIT1002_03798 at 4246.200 kb on - strand, within MIT1002_03798 at 4246.211 kb on + strand, within MIT1002_03798 at 4246.241 kb on - strand at 4246.268 kb on - strand at 4246.277 kb on - strand at 4246.292 kb on + strand at 4246.300 kb on - strand at 4246.342 kb on + strand at 4246.383 kb on + strand, within MIT1002_03799 at 4246.383 kb on + strand, within MIT1002_03799 at 4246.391 kb on - strand, within MIT1002_03799 at 4246.431 kb on + strand, within MIT1002_03799 at 4246.439 kb on - strand, within MIT1002_03799 at 4246.441 kb on + strand, within MIT1002_03799 at 4246.473 kb on - strand, within MIT1002_03799 at 4246.587 kb on - strand, within MIT1002_03799 at 4246.654 kb on - strand, within MIT1002_03799 at 4246.681 kb on - strand, within MIT1002_03799 at 4246.701 kb on + strand, within MIT1002_03799 at 4246.704 kb on + strand, within MIT1002_03799 at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.757 kb on + strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.765 kb on - strand at 4246.809 kb on + strand at 4246.902 kb on - strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.929 kb on - strand, within MIT1002_03800 at 4246.936 kb on + strand, within MIT1002_03800 at 4246.944 kb on - strand, within MIT1002_03800 at 4246.973 kb on + strand, within MIT1002_03800 at 4246.975 kb on + strand, within MIT1002_03800 at 4247.003 kb on - strand, within MIT1002_03800 at 4247.093 kb on + strand, within MIT1002_03800 at 4247.094 kb on + strand, within MIT1002_03800 at 4247.125 kb on - strand, within MIT1002_03800 at 4247.167 kb on - strand, within MIT1002_03800 at 4247.202 kb on + strand at 4247.319 kb on + strand at 4247.327 kb on - strand at 4247.363 kb on - strand at 4247.405 kb on + strand at 4247.413 kb on - strand at 4247.496 kb on - strand, within MIT1002_03801 at 4247.531 kb on + strand, within MIT1002_03801 at 4247.531 kb on + strand, within MIT1002_03801 at 4247.532 kb on - strand, within MIT1002_03801 at 4247.549 kb on - strand, within MIT1002_03801 at 4247.549 kb on - strand, within MIT1002_03801 at 4247.596 kb on - strand, within MIT1002_03801 at 4247.596 kb on - strand, within MIT1002_03801 at 4247.596 kb on - strand, within MIT1002_03801 at 4247.611 kb on + strand, within MIT1002_03801 at 4247.650 kb on - strand at 4247.834 kb on + strand at 4247.837 kb on - strand at 4247.839 kb on + strand at 4247.839 kb on + strand at 4247.907 kb on - strand, within MIT1002_03802 at 4247.997 kb on - strand, within MIT1002_03802 at 4248.085 kb on - strand, within MIT1002_03802 at 4248.174 kb on + strand, within MIT1002_03802
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 4,245,773 - +0.5 4,245,773 - +0.6 4,245,773 - +0.1 4,245,773 - +0.8 4,245,773 - -1.2 4,245,773 - +0.4 4,245,773 - +0.2 4,245,773 - +0.1 4,245,773 - -0.4 4,245,773 - -0.4 4,245,773 - -1.9 4,245,773 - +0.9 4,245,821 + +0.1 4,245,882 - MIT1002_03798 0.15 -0.4 4,245,882 - MIT1002_03798 0.15 -0.7 4,245,886 + MIT1002_03798 0.16 +0.2 4,245,886 + MIT1002_03798 0.16 -0.8 4,245,886 + MIT1002_03798 0.16 -1.1 4,245,929 - MIT1002_03798 0.26 +0.9 4,245,941 + MIT1002_03798 0.28 +1.3 4,245,949 - MIT1002_03798 0.30 +0.0 4,245,949 - MIT1002_03798 0.30 +0.5 4,245,989 - MIT1002_03798 0.38 -0.6 4,246,040 - MIT1002_03798 0.49 +0.4 4,246,064 + MIT1002_03798 0.55 -0.0 4,246,085 + MIT1002_03798 0.59 -0.2 4,246,178 - MIT1002_03798 0.79 -0.8 4,246,192 + MIT1002_03798 0.82 -0.3 4,246,192 + MIT1002_03798 0.82 -0.9 4,246,200 - MIT1002_03798 0.84 +1.5 4,246,211 + MIT1002_03798 0.86 -1.0 4,246,241 - -1.0 4,246,268 - -0.6 4,246,277 - +0.9 4,246,292 + +0.2 4,246,300 - -0.2 4,246,342 + -0.5 4,246,383 + MIT1002_03799 0.15 -1.8 4,246,383 + MIT1002_03799 0.15 -0.2 4,246,391 - MIT1002_03799 0.17 -1.0 4,246,431 + MIT1002_03799 0.26 -1.2 4,246,439 - MIT1002_03799 0.27 -2.1 4,246,441 + MIT1002_03799 0.28 -0.2 4,246,473 - MIT1002_03799 0.34 -1.7 4,246,587 - MIT1002_03799 0.58 -0.5 4,246,654 - MIT1002_03799 0.73 -1.4 4,246,681 - MIT1002_03799 0.78 -0.3 4,246,701 + MIT1002_03799 0.82 -0.5 4,246,704 + MIT1002_03799 0.83 -2.8 4,246,757 + -1.5 4,246,757 + -2.6 4,246,757 + +0.1 4,246,757 + +0.2 4,246,757 + -0.6 4,246,757 + -2.4 4,246,757 + -0.7 4,246,757 + +0.8 4,246,757 + +0.0 4,246,757 + -1.3 4,246,757 + -1.5 4,246,757 + -0.2 4,246,757 + -1.2 4,246,757 + -2.1 4,246,757 + -2.5 4,246,765 - -0.2 4,246,765 - -0.7 4,246,765 - -1.4 4,246,765 - -1.2 4,246,765 - +2.8 4,246,765 - +0.5 4,246,765 - +2.0 4,246,765 - -1.2 4,246,765 - +0.4 4,246,765 - -0.7 4,246,765 - +0.2 4,246,765 - -0.9 4,246,765 - +1.1 4,246,765 - -2.3 4,246,765 - -0.2 4,246,765 - -0.5 4,246,765 - -0.1 4,246,765 - +1.7 4,246,765 - +0.4 4,246,765 - +0.8 4,246,809 + -0.8 4,246,902 - MIT1002_03800 0.28 -0.0 4,246,921 + MIT1002_03800 0.32 +1.4 4,246,921 + MIT1002_03800 0.32 -2.0 4,246,921 + MIT1002_03800 0.32 -0.9 4,246,921 + MIT1002_03800 0.32 -0.2 4,246,929 - MIT1002_03800 0.34 -0.6 4,246,936 + MIT1002_03800 0.35 +0.2 4,246,944 - MIT1002_03800 0.37 +0.2 4,246,973 + MIT1002_03800 0.43 +2.4 4,246,975 + MIT1002_03800 0.43 -1.2 4,247,003 - MIT1002_03800 0.49 +0.3 4,247,093 + MIT1002_03800 0.69 +0.7 4,247,094 + MIT1002_03800 0.69 +0.2 4,247,125 - MIT1002_03800 0.76 +1.4 4,247,167 - MIT1002_03800 0.85 -0.8 4,247,202 + +0.6 4,247,319 + -0.8 4,247,327 - +1.6 4,247,363 - -0.2 4,247,405 + +0.7 4,247,413 - -0.4 4,247,496 - MIT1002_03801 0.30 -1.0 4,247,531 + MIT1002_03801 0.44 -1.1 4,247,531 + MIT1002_03801 0.44 -0.9 4,247,532 - MIT1002_03801 0.45 -0.5 4,247,549 - MIT1002_03801 0.52 -1.7 4,247,549 - MIT1002_03801 0.52 -0.6 4,247,596 - MIT1002_03801 0.71 +1.0 4,247,596 - MIT1002_03801 0.71 +0.0 4,247,596 - MIT1002_03801 0.71 -1.3 4,247,611 + MIT1002_03801 0.78 -0.1 4,247,650 - +0.5 4,247,834 + -1.0 4,247,837 - -1.3 4,247,839 + -2.3 4,247,839 + -0.6 4,247,907 - MIT1002_03802 0.12 -2.3 4,247,997 - MIT1002_03802 0.19 -1.0 4,248,085 - MIT1002_03802 0.27 -0.0 4,248,174 + MIT1002_03802 0.34 -2.2
Or see this region's nucleotide sequence