Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03795

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03794 and MIT1002_03795 are separated by 62 nucleotidesMIT1002_03795 and MIT1002_03796 are separated by 23 nucleotides MIT1002_03794: MIT1002_03794 - Epoxyqueuosine reductase, at 4,241,603 to 4,242,745 _03794 MIT1002_03795: MIT1002_03795 - hypothetical protein, at 4,242,808 to 4,243,431 _03795 MIT1002_03796: MIT1002_03796 - Uroporphyrinogen decarboxylase, at 4,243,455 to 4,244,546 _03796 Position (kb) 4242 4243 4244Strain fitness (log2 ratio) -2 -1 0 1 2at 4241.812 kb on + strand, within MIT1002_03794at 4241.823 kb on + strand, within MIT1002_03794at 4241.823 kb on + strand, within MIT1002_03794at 4241.823 kb on + strand, within MIT1002_03794at 4241.823 kb on + strand, within MIT1002_03794at 4241.831 kb on - strand, within MIT1002_03794at 4241.927 kb on - strand, within MIT1002_03794at 4241.965 kb on - strand, within MIT1002_03794at 4242.080 kb on + strand, within MIT1002_03794at 4242.080 kb on + strand, within MIT1002_03794at 4242.088 kb on - strand, within MIT1002_03794at 4242.088 kb on - strand, within MIT1002_03794at 4242.088 kb on - strand, within MIT1002_03794at 4242.088 kb on - strand, within MIT1002_03794at 4242.090 kb on + strand, within MIT1002_03794at 4242.090 kb on + strand, within MIT1002_03794at 4242.098 kb on - strand, within MIT1002_03794at 4242.098 kb on - strand, within MIT1002_03794at 4242.166 kb on - strand, within MIT1002_03794at 4242.298 kb on - strand, within MIT1002_03794at 4242.308 kb on + strand, within MIT1002_03794at 4242.328 kb on - strand, within MIT1002_03794at 4242.422 kb on + strand, within MIT1002_03794at 4242.422 kb on + strand, within MIT1002_03794at 4242.422 kb on + strand, within MIT1002_03794at 4242.440 kb on - strand, within MIT1002_03794at 4242.464 kb on + strand, within MIT1002_03794at 4242.467 kb on - strand, within MIT1002_03794at 4242.472 kb on - strand, within MIT1002_03794at 4242.485 kb on + strand, within MIT1002_03794at 4242.491 kb on - strand, within MIT1002_03794at 4242.569 kb on + strand, within MIT1002_03794at 4242.751 kb on + strandat 4242.756 kb on + strandat 4242.759 kb on - strandat 4242.832 kb on + strandat 4242.840 kb on - strandat 4242.856 kb on - strandat 4242.945 kb on - strand, within MIT1002_03795at 4242.992 kb on + strand, within MIT1002_03795at 4243.002 kb on + strand, within MIT1002_03795at 4243.018 kb on + strand, within MIT1002_03795at 4243.026 kb on - strand, within MIT1002_03795at 4243.026 kb on - strand, within MIT1002_03795at 4243.026 kb on - strand, within MIT1002_03795at 4243.066 kb on + strand, within MIT1002_03795at 4243.074 kb on - strand, within MIT1002_03795at 4243.074 kb on - strand, within MIT1002_03795at 4243.225 kb on + strand, within MIT1002_03795at 4243.235 kb on + strand, within MIT1002_03795at 4243.251 kb on + strand, within MIT1002_03795at 4243.285 kb on + strand, within MIT1002_03795at 4243.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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4,241,812 + MIT1002_03794 0.18 -0.3
4,241,823 + MIT1002_03794 0.19 -0.0
4,241,823 + MIT1002_03794 0.19 -0.2
4,241,823 + MIT1002_03794 0.19 -2.5
4,241,823 + MIT1002_03794 0.19 -1.0
4,241,831 - MIT1002_03794 0.20 -0.1
4,241,927 - MIT1002_03794 0.28 -0.0
4,241,965 - MIT1002_03794 0.32 +0.2
4,242,080 + MIT1002_03794 0.42 -0.2
4,242,080 + MIT1002_03794 0.42 +0.0
4,242,088 - MIT1002_03794 0.42 +0.2
4,242,088 - MIT1002_03794 0.42 -0.3
4,242,088 - MIT1002_03794 0.42 -0.1
4,242,088 - MIT1002_03794 0.42 -0.0
4,242,090 + MIT1002_03794 0.43 -0.6
4,242,090 + MIT1002_03794 0.43 -0.9
4,242,098 - MIT1002_03794 0.43 +2.1
4,242,098 - MIT1002_03794 0.43 -0.1
4,242,166 - MIT1002_03794 0.49 +0.4
4,242,298 - MIT1002_03794 0.61 +0.2
4,242,308 + MIT1002_03794 0.62 +1.2
4,242,328 - MIT1002_03794 0.63 +0.5
4,242,422 + MIT1002_03794 0.72 +0.8
4,242,422 + MIT1002_03794 0.72 -0.1
4,242,422 + MIT1002_03794 0.72 +1.1
4,242,440 - MIT1002_03794 0.73 +0.1
4,242,464 + MIT1002_03794 0.75 +0.1
4,242,467 - MIT1002_03794 0.76 +0.3
4,242,472 - MIT1002_03794 0.76 -0.6
4,242,485 + MIT1002_03794 0.77 -1.8
4,242,491 - MIT1002_03794 0.78 +1.9
4,242,569 + MIT1002_03794 0.85 -1.6
4,242,751 + +0.0
4,242,756 + +1.3
4,242,759 - +1.4
4,242,832 + +0.8
4,242,840 - +0.1
4,242,856 - -0.7
4,242,945 - MIT1002_03795 0.22 +0.0
4,242,992 + MIT1002_03795 0.29 -2.5
4,243,002 + MIT1002_03795 0.31 +1.6
4,243,018 + MIT1002_03795 0.34 +0.1
4,243,026 - MIT1002_03795 0.35 -0.2
4,243,026 - MIT1002_03795 0.35 +0.9
4,243,026 - MIT1002_03795 0.35 -2.6
4,243,066 + MIT1002_03795 0.41 -0.1
4,243,074 - MIT1002_03795 0.43 -1.4
4,243,074 - MIT1002_03795 0.43 -1.6
4,243,225 + MIT1002_03795 0.67 -1.0
4,243,235 + MIT1002_03795 0.68 -0.1
4,243,251 + MIT1002_03795 0.71 -0.3
4,243,285 + MIT1002_03795 0.76 -1.2
4,243,407 + +0.2

Or see this region's nucleotide sequence