Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03609

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
4,031,976	+		MIT1002_03607	0.69	-0.1
4,032,008	+		MIT1002_03607	0.71	-0.6
4,032,036	+		MIT1002_03607	0.72	-0.1
4,032,051	+		MIT1002_03607	0.73	-0.0
4,032,103	+		MIT1002_03607	0.76	-0.0
4,032,103	+		MIT1002_03607	0.76	+1.7
4,032,111	-		MIT1002_03607	0.76	+0.1
4,032,142	-		MIT1002_03607	0.78	-0.1
4,032,150	-		MIT1002_03607	0.78	-0.3
4,032,209	+		MIT1002_03607	0.81	-0.7
4,032,209	+		MIT1002_03607	0.81	-1.9
4,032,217	-		MIT1002_03607	0.82	-0.7
4,032,217	-		MIT1002_03607	0.82	-0.2
4,032,231	+		MIT1002_03607	0.83	-0.0
4,032,253	+		MIT1002_03607	0.84	-1.6
4,032,262	-		MIT1002_03607	0.84	-0.5
4,032,262	-		MIT1002_03607	0.84	-0.5
4,032,289	+		MIT1002_03607	0.86	-1.6
4,032,297	-		MIT1002_03607	0.86	+0.1
4,032,300	-		MIT1002_03607	0.86	+0.4
4,032,304	+		MIT1002_03607	0.86	+0.9
4,032,304	+		MIT1002_03607	0.86	-0.0
4,032,312	-		MIT1002_03607	0.87	+0.7
4,032,314	+		MIT1002_03607	0.87	-2.4
4,032,332	-		MIT1002_03607	0.88	+0.1
4,032,340	+		MIT1002_03607	0.88	-0.5
4,032,340	+		MIT1002_03607	0.88	+1.5
4,032,348	-		MIT1002_03607	0.89	-1.1
4,032,375	+				+0.8
4,032,375	+				-0.5
4,032,382	-				+0.5
4,032,383	-				-1.5
4,032,383	-				+0.4
4,032,414	+				-0.5
4,032,424	+				-0.1
4,032,424	+				-0.5
4,032,432	-				-0.2
4,032,432	-				+0.4
4,032,473	-				-0.8
4,032,473	-				+0.1
4,032,473	-				+2.4
4,032,491	+				-0.3
4,032,504	-				-1.6
4,032,538	-				+1.6
4,032,551	+				+0.7
4,032,551	+				-0.7
4,032,552	-				+1.0
4,032,559	-				-1.0
4,032,559	-				+0.6
4,032,559	-				-0.0
4,032,591	+				-0.3
4,032,592	+				+1.0
4,032,594	-				-0.0
4,032,599	-				+0.4
4,032,600	-				+0.5
4,032,628	-				-0.2
4,032,628	-				-0.1
4,032,668	-				+0.6
4,032,696	+				+0.3
4,032,704	-				+0.6
4,032,710	-				-0.2
4,032,845	-		MIT1002_03608	0.53	-0.6
4,032,845	-		MIT1002_03608	0.53	-0.5
4,032,855	-		MIT1002_03608	0.56	+0.3
4,032,901	+		MIT1002_03608	0.71	-0.9
4,033,127	+		MIT1002_03609	0.65	-2.0
4,033,166	+		MIT1002_03609	0.80	-0.8
4,033,262	+				+0.1
4,033,262	+				-2.7
4,033,309	+				+0.5
4,033,310	-				+0.0
4,033,385	+				+1.3
4,033,395	+				-0.4
4,033,395	+				+0.3
4,033,431	+				-1.0
4,033,439	-				-0.0
4,033,439	-				-0.7
4,033,470	+				+0.3
4,033,470	+				+0.0
4,033,478	-				-0.1
4,033,501	+				-0.6
4,033,526	+				-1.2
4,033,534	-				+0.8
4,033,597	-				+0.6
4,033,652	+				-0.6
4,033,660	-				+0.9
4,033,691	-		MIT1002_03610	0.10	-0.8
4,033,705	-		MIT1002_03610	0.11	+1.2
4,033,719	+		MIT1002_03610	0.12	+0.4
4,033,727	-		MIT1002_03610	0.12	+0.9
4,033,727	-		MIT1002_03610	0.12	+0.7
4,033,796	-		MIT1002_03610	0.15	+0.5
4,033,823	+		MIT1002_03610	0.16	+0.1
4,033,826	+		MIT1002_03610	0.16	+1.2
4,033,831	-		MIT1002_03610	0.16	-0.0
4,033,898	-		MIT1002_03610	0.19	+1.2
4,033,925	+		MIT1002_03610	0.20	+0.6
4,033,946	+		MIT1002_03610	0.21	+0.6
4,033,953	+		MIT1002_03610	0.21	+0.9
4,033,954	-		MIT1002_03610	0.21	+0.4
4,033,960	+		MIT1002_03610	0.22	+1.3
4,033,961	-		MIT1002_03610	0.22	-1.3
4,034,013	-		MIT1002_03610	0.24	-0.4
4,034,031	+		MIT1002_03610	0.25	+0.5
4,034,034	-		MIT1002_03610	0.25	-1.4
4,034,075	+		MIT1002_03610	0.27	+0.2
4,034,091	+		MIT1002_03610	0.27	+0.6
4,034,091	+		MIT1002_03610	0.27	+0.4
4,034,099	-		MIT1002_03610	0.28	+1.8
4,034,099	-		MIT1002_03610	0.28	+2.0
4,034,099	-		MIT1002_03610	0.28	+0.2
4,034,099	-		MIT1002_03610	0.28	-0.1
4,034,131	-		MIT1002_03610	0.29	-0.0
4,034,158	-		MIT1002_03610	0.30	-0.3
4,034,158	-		MIT1002_03610	0.30	-0.8
4,034,165	-		MIT1002_03610	0.30	+0.3