Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03553

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
3,974,852	-		MIT1002_03552	0.61	+0.6
3,974,914	-		MIT1002_03552	0.65	-0.6
3,974,945	-		MIT1002_03552	0.66	-0.8
3,975,152	-		MIT1002_03552	0.78	-0.7
3,975,154	+		MIT1002_03552	0.79	+0.3
3,975,159	+		MIT1002_03552	0.79	-0.0
3,975,162	-		MIT1002_03552	0.79	+0.2
3,975,162	-		MIT1002_03552	0.79	+0.2
3,975,253	+		MIT1002_03552	0.84	-0.4
3,975,354	-				+0.1
3,975,390	+				+0.4
3,975,398	-				-2.5
3,975,398	-				+1.4
3,975,400	+				+1.0
3,975,473	-				-0.0
3,975,473	-				+1.1
3,975,578	-				-0.5
3,975,578	-				-0.0
3,975,685	+				+0.3
3,975,768	+				-0.6
3,975,773	+				+0.0
3,975,773	+				-0.0
3,975,795	+				+2.5
3,975,805	+				+0.6
3,975,813	-		MIT1002_03553	0.10	-0.3
3,975,833	+		MIT1002_03553	0.13	+1.2
3,975,857	+		MIT1002_03553	0.15	-0.1
3,976,254	-		MIT1002_03553	0.60	-1.3
3,976,282	+		MIT1002_03553	0.63	-0.4
3,976,318	-		MIT1002_03553	0.67	-0.8
3,976,349	+		MIT1002_03553	0.71	+1.0
3,976,364	+		MIT1002_03553	0.72	+0.4
3,976,369	+		MIT1002_03553	0.73	-2.0
3,976,431	-		MIT1002_03553	0.80	-0.4
3,976,478	+		MIT1002_03553	0.85	-1.2
3,976,486	-		MIT1002_03553	0.86	-1.3
3,976,754	-		MIT1002_03554	0.14	+0.6
3,976,754	-		MIT1002_03554	0.14	-0.1
3,976,931	+		MIT1002_03554	0.41	+0.2
3,976,935	-		MIT1002_03554	0.41	+0.4
3,976,937	-		MIT1002_03554	0.41	+1.1
3,976,949	+		MIT1002_03554	0.43	-1.2
3,976,949	+		MIT1002_03554	0.43	+0.8
3,977,133	-		MIT1002_03554	0.71	-1.8
3,977,170	-		MIT1002_03554	0.76	-0.4
3,977,252	+		MIT1002_03554	0.88	-1.1
3,977,264	-				-2.8
3,977,303	+				+0.3
3,977,514	+				-0.5
3,977,514	+				+0.3
3,977,520	+				-1.1
3,977,528	-				-0.2
3,977,540	+				+0.9
3,977,540	+				+1.1
3,977,567	-				-0.7