Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03539

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03538 and MIT1002_03539 are separated by 148 nucleotidesMIT1002_03539 and MIT1002_03540 overlap by 4 nucleotides MIT1002_03538: MIT1002_03538 - Type III pantothenate kinase, at 3,955,131 to 3,955,889 _03538 MIT1002_03539: MIT1002_03539 - Bifunctional protein BirA, at 3,956,038 to 3,957,024 _03539 MIT1002_03540: MIT1002_03540 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,957,021 to 3,958,052 _03540 Position (kb) 3956 3957 3958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3956.046 kb on + strandat 3956.084 kb on - strandat 3956.084 kb on - strandat 3956.207 kb on - strand, within MIT1002_03539at 3956.871 kb on + strand, within MIT1002_03539at 3956.897 kb on + strand, within MIT1002_03539at 3956.947 kb on + strandat 3956.957 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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3,956,046 + -0.2
3,956,084 - -0.1
3,956,084 - -1.5
3,956,207 - MIT1002_03539 0.17 -3.3
3,956,871 + MIT1002_03539 0.84 -2.7
3,956,897 + MIT1002_03539 0.87 -4.3
3,956,947 + -1.0
3,956,957 + -2.0

Or see this region's nucleotide sequence