Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03491

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
3,897,284	+				-0.2
3,897,287	+				-1.6
3,897,292	+				-0.4
3,897,292	-				-0.9
3,897,295	-				+0.0
3,897,295	-				+0.2
3,897,295	-				-0.9
3,897,295	-				-0.3
3,897,302	+				+0.2
3,897,302	+				-1.1
3,897,302	+				-2.0
3,897,302	+				+0.7
3,897,302	+				+0.4
3,897,302	+				+0.2
3,897,310	-				-0.1
3,897,310	-				-0.4
3,897,310	-				-1.6
3,897,358	-				+0.4
3,897,359	+				+1.8
3,897,360	+				+0.3
3,897,362	+				+1.1
3,897,362	+				+2.5
3,897,370	-				+0.3
3,897,381	-		MIT1002_03490	0.10	-1.2
3,897,388	-		MIT1002_03490	0.11	-0.5
3,897,388	-		MIT1002_03490	0.11	+0.5
3,897,396	+		MIT1002_03490	0.13	-0.4
3,897,426	-		MIT1002_03490	0.18	-1.6
3,897,438	-		MIT1002_03490	0.19	-0.6
3,897,459	+		MIT1002_03490	0.23	+0.0
3,897,479	-		MIT1002_03490	0.26	-0.6
3,897,497	-		MIT1002_03490	0.29	-0.4
3,897,517	+		MIT1002_03490	0.32	-0.6
3,897,576	+		MIT1002_03490	0.42	+0.4
3,897,576	+		MIT1002_03490	0.42	+0.9
3,897,584	-		MIT1002_03490	0.43	+0.0
3,897,591	-		MIT1002_03490	0.44	+0.8
3,897,600	-		MIT1002_03490	0.46	+1.2
3,897,782	+		MIT1002_03490	0.75	-2.4
3,897,784	+		MIT1002_03490	0.75	+0.6
3,897,918	+				-0.2
3,898,027	+				+2.2
3,898,027	+				-0.3
3,898,027	-				-0.1
3,898,035	-				+0.4
3,898,035	-				+2.8
3,898,045	-				-2.2
3,898,061	+				+0.8
3,898,061	+				+0.6
3,898,069	-				+0.4
3,898,069	-				+0.9
3,898,071	-				+0.0
3,898,138	+				-0.9
3,898,139	-				-2.3
3,898,150	-				-2.8
3,898,227	-				-4.4
3,898,255	+				-1.2
3,898,255	+				-2.5
3,898,263	-				-2.9
3,898,263	-				-1.4
3,898,263	-				-0.6
3,898,263	-				-2.7
3,898,265	+				-3.8
3,898,265	+				-1.9
3,898,273	-				-2.3
3,898,527	-		MIT1002_03491	0.14	-3.3
3,898,550	+		MIT1002_03491	0.14	-2.2
3,898,552	-		MIT1002_03491	0.15	-3.3
3,898,558	-		MIT1002_03491	0.15	-4.4
3,898,558	-		MIT1002_03491	0.15	-1.3
3,898,578	+		MIT1002_03491	0.16	-2.0
3,898,587	+		MIT1002_03491	0.16	-0.2
3,898,595	-		MIT1002_03491	0.16	-3.0
3,898,661	-		MIT1002_03491	0.19	-4.0
3,898,688	+		MIT1002_03491	0.20	-0.4
3,898,707	+		MIT1002_03491	0.20	-1.5
3,898,708	+		MIT1002_03491	0.20	-2.3
3,898,794	+		MIT1002_03491	0.24	-3.4
3,898,823	+		MIT1002_03491	0.25	-0.6
3,898,831	-		MIT1002_03491	0.25	-4.4
3,898,873	-		MIT1002_03491	0.27	-2.0
3,898,890	-		MIT1002_03491	0.27	-1.8
3,898,895	-		MIT1002_03491	0.28	-1.4
3,898,911	-		MIT1002_03491	0.28	-2.3
3,898,917	+		MIT1002_03491	0.28	-2.2
3,898,917	+		MIT1002_03491	0.28	-2.2
3,898,934	+		MIT1002_03491	0.29	-1.6
3,898,942	-		MIT1002_03491	0.29	-2.2
3,898,942	-		MIT1002_03491	0.29	-1.8
3,899,001	+		MIT1002_03491	0.32	-1.8
3,899,007	-		MIT1002_03491	0.32	-2.7
3,899,037	-		MIT1002_03491	0.33	-4.3
3,899,115	+		MIT1002_03491	0.36	-2.7
3,899,147	+		MIT1002_03491	0.37	-1.9
3,899,233	+		MIT1002_03491	0.41	-1.3
3,899,233	+		MIT1002_03491	0.41	-2.9
3,899,233	+		MIT1002_03491	0.41	-3.6
3,899,233	+		MIT1002_03491	0.41	-2.9
3,899,233	+		MIT1002_03491	0.41	-1.2
3,899,241	-		MIT1002_03491	0.41	-3.2
3,899,241	-		MIT1002_03491	0.41	-4.0
3,899,241	-		MIT1002_03491	0.41	-1.9
3,899,241	-		MIT1002_03491	0.41	-1.2
3,899,241	-		MIT1002_03491	0.41	-1.4
3,899,241	-		MIT1002_03491	0.41	-2.5
3,899,241	-		MIT1002_03491	0.41	-1.9
3,899,241	-		MIT1002_03491	0.41	-1.6
3,899,241	-		MIT1002_03491	0.41	-0.9
3,899,241	-		MIT1002_03491	0.41	-1.3
3,899,282	-		MIT1002_03491	0.42	-2.4
3,899,282	-		MIT1002_03491	0.42	-2.4
3,899,381	+		MIT1002_03491	0.46	-3.0
3,899,389	-		MIT1002_03491	0.46	-1.5
3,899,389	-		MIT1002_03491	0.46	-3.7
3,899,389	-		MIT1002_03491	0.46	-1.7
3,899,404	+		MIT1002_03491	0.47	-2.4
3,899,404	+		MIT1002_03491	0.47	-3.4
3,899,452	-		MIT1002_03491	0.49	-2.4
3,899,496	+		MIT1002_03491	0.51	-2.1
3,899,514	-		MIT1002_03491	0.51	-1.2
3,899,514	-		MIT1002_03491	0.51	-1.2
3,899,516	+		MIT1002_03491	0.51	-2.7
3,899,516	+		MIT1002_03491	0.51	-2.1
3,899,524	-		MIT1002_03491	0.52	-2.9
3,899,524	-		MIT1002_03491	0.52	-4.3
3,899,557	-		MIT1002_03491	0.53	+0.4
3,899,585	+		MIT1002_03491	0.54	-0.3
3,899,644	-		MIT1002_03491	0.56	-4.1
3,899,708	-		MIT1002_03491	0.59	-4.8
3,899,806	+		MIT1002_03491	0.62	-4.0
3,899,863	-		MIT1002_03491	0.65	-3.6
3,899,863	-		MIT1002_03491	0.65	-1.2
3,899,865	+		MIT1002_03491	0.65	-2.1
3,899,874	-		MIT1002_03491	0.65	-1.1
3,899,875	-		MIT1002_03491	0.65	-2.0
3,899,945	+		MIT1002_03491	0.68	-3.3
3,899,983	-		MIT1002_03491	0.69	-2.8
3,900,022	-		MIT1002_03491	0.71	-2.7
3,900,043	-		MIT1002_03491	0.71	-2.2
3,900,048	+		MIT1002_03491	0.72	-1.6
3,900,061	+		MIT1002_03491	0.72	-2.4
3,900,130	+		MIT1002_03491	0.75	-1.9
3,900,177	+		MIT1002_03491	0.77	-2.0
3,900,208	+		MIT1002_03491	0.78	-1.9
3,900,242	-		MIT1002_03491	0.79	-3.2
3,900,252	+		MIT1002_03491	0.79	-1.6
3,900,260	-		MIT1002_03491	0.80	-4.0
3,900,260	-		MIT1002_03491	0.80	-3.3
3,900,318	-		MIT1002_03491	0.82	-3.1
3,900,346	-		MIT1002_03491	0.83	-2.1
3,900,366	+		MIT1002_03491	0.84	-2.8
3,900,493	+		MIT1002_03491	0.89	-1.9
3,900,496	-		MIT1002_03491	0.89	-2.9
3,900,515	+		MIT1002_03491	0.89	-3.8
3,900,523	-		MIT1002_03491	0.90	-0.4
3,900,542	-				-0.6
3,900,543	-				-1.3
3,900,543	-				-0.1
3,900,620	+				-1.5
3,900,628	-				-2.9
3,900,706	+				+0.4
3,900,714	-				-0.9
3,900,728	+				+0.2
3,900,728	+				-3.7
3,900,736	-				-3.9
3,900,777	+				-3.2
3,900,777	+				-0.1
3,900,785	-				-2.6
3,900,785	-				-2.1
3,900,785	-				-2.9
3,900,785	-				-2.6
3,900,785	-				-0.9
3,900,787	+				-0.6
3,900,790	-				-3.4
3,900,888	+				+0.9