Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03214

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
3,584,488	+		MIT1002_03212	0.77	+0.8
3,584,488	+		MIT1002_03212	0.77	+0.6
3,584,496	-		MIT1002_03212	0.77	-0.4
3,584,496	-		MIT1002_03212	0.77	+2.2
3,584,506	-		MIT1002_03212	0.78	+0.5
3,584,506	-		MIT1002_03212	0.78	+0.4
3,584,508	+		MIT1002_03212	0.78	-0.2
3,584,634	+		MIT1002_03212	0.86	+0.6
3,584,647	-		MIT1002_03212	0.87	+1.2
3,584,724	+				-1.4
3,584,783	-				-1.8
3,584,811	-				-0.6
3,584,813	-				-1.0
3,584,957	+		MIT1002_03213	0.14	+0.0
3,585,004	-		MIT1002_03213	0.22	+0.5
3,585,029	-		MIT1002_03213	0.26	+1.1
3,585,095	+		MIT1002_03213	0.38	-0.3
3,585,095	+		MIT1002_03213	0.38	-0.2
3,585,103	-		MIT1002_03213	0.40	+0.6
3,585,269	+		MIT1002_03213	0.69	+0.7
3,585,269	+		MIT1002_03213	0.69	-0.8
3,585,269	+		MIT1002_03213	0.69	+0.5
3,585,277	-		MIT1002_03213	0.70	-1.1
3,585,277	-		MIT1002_03213	0.70	-0.1
3,585,297	+		MIT1002_03213	0.74	-2.1
3,585,297	+		MIT1002_03213	0.74	+0.6
3,585,299	+		MIT1002_03213	0.74	+0.1
3,585,305	-		MIT1002_03213	0.75	+0.1
3,585,305	-		MIT1002_03213	0.75	-0.4
3,585,329	-		MIT1002_03213	0.79	+0.7
3,585,409	+				-1.9
3,585,422	-				+0.8
3,585,474	-				-0.0
3,585,546	+		MIT1002_03214	0.12	-0.5
3,585,554	-		MIT1002_03214	0.13	+0.8
3,585,568	-		MIT1002_03214	0.14	-1.2
3,585,570	+		MIT1002_03214	0.14	+1.0
3,585,570	+		MIT1002_03214	0.14	+1.5
3,585,570	+		MIT1002_03214	0.14	-0.1
3,585,575	+		MIT1002_03214	0.15	-1.9
3,585,578	-		MIT1002_03214	0.15	-0.2
3,585,578	-		MIT1002_03214	0.15	+2.3
3,585,578	-		MIT1002_03214	0.15	-3.4
3,585,583	-		MIT1002_03214	0.16	-0.1
3,585,583	-		MIT1002_03214	0.16	-1.0
3,585,595	-		MIT1002_03214	0.17	-0.7
3,585,649	-		MIT1002_03214	0.23	+1.5
3,585,700	-		MIT1002_03214	0.29	+0.5
3,585,710	+		MIT1002_03214	0.30	-0.6
3,585,728	-		MIT1002_03214	0.32	+0.6
3,585,728	-		MIT1002_03214	0.32	+1.6
3,585,740	-		MIT1002_03214	0.33	+1.0
3,585,765	+		MIT1002_03214	0.36	+0.1
3,585,775	+		MIT1002_03214	0.37	-0.5
3,585,859	+		MIT1002_03214	0.47	-0.3
3,585,867	-		MIT1002_03214	0.48	-0.1
3,585,867	-		MIT1002_03214	0.48	-0.2
3,585,867	-		MIT1002_03214	0.48	+2.5
3,585,886	-		MIT1002_03214	0.50	-0.5
3,585,918	+		MIT1002_03214	0.53	+0.8
3,585,961	+		MIT1002_03214	0.58	-0.5
3,586,008	-		MIT1002_03214	0.63	-0.1
3,586,055	-		MIT1002_03214	0.69	-1.3
3,586,055	-		MIT1002_03214	0.69	+1.0
3,586,065	-		MIT1002_03214	0.70	+0.4
3,586,115	+		MIT1002_03214	0.75	-0.2
3,586,123	-		MIT1002_03214	0.76	+0.4
3,586,123	-		MIT1002_03214	0.76	+0.9
3,586,138	-		MIT1002_03214	0.78	+1.2
3,586,138	-		MIT1002_03214	0.78	-0.0
3,586,138	-		MIT1002_03214	0.78	+0.7
3,586,174	-		MIT1002_03214	0.82	+0.0
3,586,184	-		MIT1002_03214	0.83	-0.1
3,586,353	-				+0.4
3,586,413	-				-0.6
3,586,455	+				-0.7
3,586,474	-				-1.1
3,586,528	+				+0.0
3,586,570	+				+0.6
3,586,694	-				+0.5
3,586,715	+		MIT1002_03215	0.10	+0.3
3,586,725	-		MIT1002_03215	0.11	+1.7