Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03206

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
3,573,493	-		MIT1002_03204	0.79	+0.3
3,573,576	+		MIT1002_03204	0.84	+0.2
3,573,631	+		MIT1002_03204	0.88	-1.6
3,573,648	+		MIT1002_03204	0.89	-0.5
3,573,648	+		MIT1002_03204	0.89	+0.5
3,573,648	+		MIT1002_03204	0.89	+0.2
3,573,656	-		MIT1002_03204	0.89	-0.1
3,573,656	-		MIT1002_03204	0.89	+0.4
3,573,656	-		MIT1002_03204	0.89	-0.7
3,573,670	-				+0.9
3,573,670	-				+0.5
3,573,698	-				+1.4
3,573,705	-				+0.5
3,573,705	-				-0.1
3,573,715	-				+1.1
3,573,717	+				+0.4
3,573,717	+				+0.8
3,573,759	+				-0.2
3,574,098	+		MIT1002_03205	0.45	-0.7
3,574,098	+		MIT1002_03205	0.45	-1.7
3,574,106	-		MIT1002_03205	0.46	-0.1
3,574,118	-		MIT1002_03205	0.48	-0.9
3,574,124	-		MIT1002_03205	0.49	-0.2
3,574,175	-		MIT1002_03205	0.58	+0.9
3,574,217	-		MIT1002_03205	0.65	+1.0
3,574,306	-		MIT1002_03205	0.81	+0.1
3,574,332	+		MIT1002_03205	0.85	-0.4
3,574,348	-		MIT1002_03205	0.88	-0.5
3,574,409	+				-0.3
3,574,417	-				-0.6
3,574,424	+				+0.0
3,574,428	+				+0.5
3,574,433	-				+0.4
3,574,502	+				+0.5
3,574,512	-				+1.2
3,574,537	+				+0.2
3,574,556	+				-0.8
3,574,740	+		MIT1002_03206	0.24	+0.0
3,574,748	-		MIT1002_03206	0.25	+1.7
3,574,796	-		MIT1002_03206	0.30	+1.6
3,574,796	-		MIT1002_03206	0.30	+1.9
3,574,864	+		MIT1002_03206	0.36	+0.7
3,574,933	-		MIT1002_03206	0.42	-1.6
3,574,960	+		MIT1002_03206	0.45	+0.3
3,574,976	-		MIT1002_03206	0.46	+0.1
3,575,022	+		MIT1002_03206	0.51	+0.9
3,575,051	-		MIT1002_03206	0.53	+1.3
3,575,060	-		MIT1002_03206	0.54	+0.9
3,575,060	-		MIT1002_03206	0.54	+0.2
3,575,118	+		MIT1002_03206	0.60	+0.9
3,575,118	+		MIT1002_03206	0.60	+0.2
3,575,126	-		MIT1002_03206	0.60	+0.8
3,575,126	-		MIT1002_03206	0.60	+2.7
3,575,166	+		MIT1002_03206	0.64	+0.6
3,575,185	-		MIT1002_03206	0.66	-1.4
3,575,217	+		MIT1002_03206	0.69	-0.5
3,575,217	+		MIT1002_03206	0.69	-1.1
3,575,225	-		MIT1002_03206	0.70	+0.9
3,575,225	-		MIT1002_03206	0.70	+0.2
3,575,225	-		MIT1002_03206	0.70	+0.1
3,575,231	+		MIT1002_03206	0.70	+1.0
3,575,231	+		MIT1002_03206	0.70	-0.1
3,575,231	+		MIT1002_03206	0.70	-0.6
3,575,231	+		MIT1002_03206	0.70	+1.9
3,575,318	+		MIT1002_03206	0.78	-1.0
3,575,326	-		MIT1002_03206	0.79	-0.8
3,575,383	-		MIT1002_03206	0.84	+0.8
3,575,404	-		MIT1002_03206	0.86	-0.6
3,575,424	+		MIT1002_03206	0.88	-1.2
3,575,433	+		MIT1002_03206	0.89	+2.5
3,575,441	-		MIT1002_03206	0.90	+1.4
3,575,568	+				+0.2
3,575,652	-		MIT1002_03207	0.11	+0.2
3,575,663	+		MIT1002_03207	0.12	+0.4
3,575,735	+		MIT1002_03207	0.18	+1.6
3,575,777	-		MIT1002_03207	0.22	+0.7
3,575,896	+		MIT1002_03207	0.32	-1.6
3,575,905	+		MIT1002_03207	0.33	+1.7
3,575,913	-		MIT1002_03207	0.34	+0.2
3,576,030	+		MIT1002_03207	0.44	+0.3
3,576,056	+		MIT1002_03207	0.46	-0.3
3,576,074	+		MIT1002_03207	0.48	-0.0
3,576,090	-		MIT1002_03207	0.49	+0.1
3,576,140	+		MIT1002_03207	0.54	+0.1
3,576,155	-		MIT1002_03207	0.55	-0.1
3,576,157	-		MIT1002_03207	0.55	+0.5
3,576,180	+		MIT1002_03207	0.57	-1.3
3,576,180	+		MIT1002_03207	0.57	-0.2
3,576,183	-		MIT1002_03207	0.57	+0.6
3,576,210	+		MIT1002_03207	0.60	-0.1
3,576,341	+		MIT1002_03207	0.71	-0.4
3,576,364	+		MIT1002_03207	0.73	+0.6
3,576,374	-		MIT1002_03207	0.74	-0.6
3,576,391	+		MIT1002_03207	0.75	-0.3
3,576,480	-		MIT1002_03207	0.83	-1.8
3,576,500	-		MIT1002_03207	0.85	-1.3
3,576,525	+		MIT1002_03207	0.87	-0.9
3,576,525	+		MIT1002_03207	0.87	-0.8
3,576,525	+		MIT1002_03207	0.87	+0.7
3,576,525	+		MIT1002_03207	0.87	+0.7
3,576,525	+		MIT1002_03207	0.87	-0.5
3,576,539	+		MIT1002_03207	0.88	-0.1