Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02926

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
3,250,767	+		MIT1002_02924	0.78	+0.1
3,250,769	-		MIT1002_02924	0.78	-1.1
3,250,772	+		MIT1002_02924	0.78	-0.6
3,250,777	+		MIT1002_02924	0.78	+1.2
3,250,777	+		MIT1002_02924	0.78	-2.1
3,250,785	-		MIT1002_02924	0.79	+0.6
3,250,785	-		MIT1002_02924	0.79	-0.0
3,250,814	+		MIT1002_02924	0.80	+0.2
3,250,822	-		MIT1002_02924	0.80	-0.5
3,250,822	-		MIT1002_02924	0.80	+0.7
3,250,849	+		MIT1002_02924	0.82	+0.9
3,250,907	+		MIT1002_02924	0.85	-0.4
3,250,973	-		MIT1002_02924	0.88	-0.2
3,250,975	+		MIT1002_02924	0.88	+0.7
3,250,983	-		MIT1002_02924	0.89	+0.9
3,250,999	+		MIT1002_02924	0.89	-0.0
3,251,119	+				+1.1
3,251,122	+				-0.9
3,251,217	-				+0.2
3,251,219	+				-0.6
3,251,245	+				+1.4
3,251,245	+				-0.0
3,251,253	-				-0.6
3,251,253	-				+1.6
3,251,253	-				-3.8
3,251,547	+		MIT1002_02925	0.44	-0.1
3,251,648	+		MIT1002_02925	0.70	-1.8
3,251,720	-		MIT1002_02925	0.88	+0.8
3,251,731	-				+0.2
3,251,776	-				-0.0
3,251,784	-				+0.3
3,251,796	-				+0.9
3,251,806	+				-1.9
3,251,861	+				+0.2
3,251,861	+				+1.0
3,251,868	-				+0.9
3,251,899	-		MIT1002_02926	0.11	+0.0
3,251,950	-		MIT1002_02926	0.15	-0.6
3,252,040	+		MIT1002_02926	0.23	+2.4
3,252,040	+		MIT1002_02926	0.23	+0.1
3,252,048	-		MIT1002_02926	0.23	-0.4
3,252,048	-		MIT1002_02926	0.23	-1.1
3,252,090	-		MIT1002_02926	0.27	-0.6
3,252,097	+		MIT1002_02926	0.27	-0.4
3,252,097	+		MIT1002_02926	0.27	+0.3
3,252,097	+		MIT1002_02926	0.27	-1.0
3,252,105	-		MIT1002_02926	0.28	-2.0
3,252,105	-		MIT1002_02926	0.28	-0.2
3,252,105	-		MIT1002_02926	0.28	+0.2
3,252,105	-		MIT1002_02926	0.28	-0.6
3,252,105	-		MIT1002_02926	0.28	+0.7
3,252,134	+		MIT1002_02926	0.30	-1.3
3,252,152	-		MIT1002_02926	0.32	-0.2
3,252,180	-		MIT1002_02926	0.34	-0.6
3,252,180	-		MIT1002_02926	0.34	-0.6
3,252,191	-		MIT1002_02926	0.35	+0.0
3,252,315	+		MIT1002_02926	0.45	-0.1
3,252,323	-		MIT1002_02926	0.45	-0.4
3,252,323	-		MIT1002_02926	0.45	-1.7
3,252,381	-		MIT1002_02926	0.50	-2.1
3,252,421	+		MIT1002_02926	0.53	+2.3
3,252,421	+		MIT1002_02926	0.53	-0.5
3,252,429	-		MIT1002_02926	0.54	+0.9
3,252,443	+		MIT1002_02926	0.55	+1.8
3,252,451	-		MIT1002_02926	0.56	-1.5
3,252,451	-		MIT1002_02926	0.56	-0.7
3,252,451	-		MIT1002_02926	0.56	-0.5
3,252,601	+		MIT1002_02926	0.68	-0.2
3,252,601	+		MIT1002_02926	0.68	+1.3
3,252,601	+		MIT1002_02926	0.68	-2.4
3,252,609	-		MIT1002_02926	0.69	-1.3
3,252,609	-		MIT1002_02926	0.69	+0.2
3,252,609	-		MIT1002_02926	0.69	-0.5
3,252,609	-		MIT1002_02926	0.69	+0.7
3,252,734	+		MIT1002_02926	0.79	+1.0
3,252,742	-		MIT1002_02926	0.79	+0.5
3,252,791	+		MIT1002_02926	0.83	-0.4
3,252,884	+				-0.5
3,252,956	+				+0.2
3,253,088	-				+1.0
3,253,219	-				-1.0
3,253,264	-				-2.7
3,253,333	-				-0.2
3,253,383	+		MIT1002_02927	0.13	+1.1
3,253,383	+		MIT1002_02927	0.13	-1.7
3,253,383	+		MIT1002_02927	0.13	-0.1
3,253,391	-		MIT1002_02927	0.14	+0.3
3,253,391	-		MIT1002_02927	0.14	-2.1
3,253,391	-		MIT1002_02927	0.14	-0.7
3,253,391	-		MIT1002_02927	0.14	-0.5
3,253,434	-		MIT1002_02927	0.22	+0.8
3,253,496	-		MIT1002_02927	0.32	+0.5
3,253,516	-		MIT1002_02927	0.36	-0.2
3,253,546	-		MIT1002_02927	0.41	-0.4
3,253,564	+		MIT1002_02927	0.44	+1.1
3,253,572	-		MIT1002_02927	0.45	+0.4
3,253,596	-		MIT1002_02927	0.49	-0.7
3,253,596	-		MIT1002_02927	0.49	-1.1
3,253,610	+		MIT1002_02927	0.51	-0.5
3,253,693	+		MIT1002_02927	0.65	-0.4
3,253,701	-		MIT1002_02927	0.67	-0.1
3,253,721	+		MIT1002_02927	0.70	+0.9
3,253,722	-		MIT1002_02927	0.70	+0.1
3,253,722	-		MIT1002_02927	0.70	-0.4
3,253,724	-		MIT1002_02927	0.71	-0.2
3,253,729	-		MIT1002_02927	0.72	-0.5
3,253,729	-		MIT1002_02927	0.72	+1.8
3,253,729	-		MIT1002_02927	0.72	+0.8
3,253,729	-		MIT1002_02927	0.72	-0.9
3,253,847	+				+0.8
3,253,857	+				+0.3
3,253,857	+				+0.6
3,253,857	+				-2.4
3,253,900	+				-0.7
3,253,908	-				-0.2
3,253,997	+				+1.5