Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02497

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,785,188	-		MIT1002_02496	0.28	+0.4
2,785,228	+		MIT1002_02496	0.32	+0.1
2,785,228	+		MIT1002_02496	0.32	-0.6
2,785,237	-		MIT1002_02496	0.33	-0.5
2,785,246	-		MIT1002_02496	0.34	+0.7
2,785,383	-		MIT1002_02496	0.47	-1.0
2,785,430	+		MIT1002_02496	0.52	+0.9
2,785,433	-		MIT1002_02496	0.52	-0.2
2,785,475	-		MIT1002_02496	0.56	+0.3
2,785,484	+		MIT1002_02496	0.57	-3.0
2,785,522	+		MIT1002_02496	0.61	+0.4
2,785,629	+		MIT1002_02496	0.71	-0.2
2,785,714	-		MIT1002_02496	0.79	+0.4
2,785,772	+		MIT1002_02496	0.85	+0.3
2,785,772	+		MIT1002_02496	0.85	+0.6
2,785,772	+		MIT1002_02496	0.85	-1.5
2,785,772	+		MIT1002_02496	0.85	+0.6
2,785,780	-		MIT1002_02496	0.86	-0.1
2,785,780	-		MIT1002_02496	0.86	+1.2
2,785,780	-		MIT1002_02496	0.86	+1.1
2,785,780	-		MIT1002_02496	0.86	-0.9
2,785,780	-		MIT1002_02496	0.86	+2.4
2,785,829	+				-0.5
2,785,839	+				+0.5
2,785,853	+				+1.3
2,785,861	-				+0.2
2,785,861	-				+0.8
2,785,861	-				-0.7
2,785,863	-				+1.6
2,786,207	-		MIT1002_02497	0.38	-1.1
2,786,224	+		MIT1002_02497	0.42	+1.1
2,786,224	+		MIT1002_02497	0.42	+0.2
2,786,224	+		MIT1002_02497	0.42	-1.5
2,786,232	-		MIT1002_02497	0.44	+0.2
2,786,232	-		MIT1002_02497	0.44	-2.7
2,786,234	+		MIT1002_02497	0.44	+0.6
2,786,259	+		MIT1002_02497	0.50	-1.2
2,786,275	-		MIT1002_02497	0.54	-0.6
2,786,285	-		MIT1002_02497	0.56	-0.3
2,786,357	-		MIT1002_02497	0.73	-0.6
2,786,511	+				-1.4
2,786,519	-				+0.5
2,786,530	+				-0.0
2,786,536	-		MIT1002_02498	0.10	-0.5
2,786,540	+		MIT1002_02498	0.11	-0.3
2,786,541	+		MIT1002_02498	0.11	-2.8
2,786,651	+		MIT1002_02498	0.37	+0.0
2,786,651	+		MIT1002_02498	0.37	+0.5
2,786,651	-		MIT1002_02498	0.37	+0.6
2,786,656	-		MIT1002_02498	0.38	-1.1
2,786,659	-		MIT1002_02498	0.39	+0.7
2,786,668	-		MIT1002_02498	0.41	+0.1
2,786,680	-		MIT1002_02498	0.43	-0.2
2,786,682	+		MIT1002_02498	0.44	-0.0
2,786,684	+		MIT1002_02498	0.44	+0.6
2,786,687	+		MIT1002_02498	0.45	-1.7
2,786,687	+		MIT1002_02498	0.45	+0.2
2,786,690	-		MIT1002_02498	0.46	+0.3
2,786,690	-		MIT1002_02498	0.46	+1.3
2,786,695	-		MIT1002_02498	0.47	+2.1
2,786,695	-		MIT1002_02498	0.47	+0.3
2,786,760	+		MIT1002_02498	0.62	-0.8
2,786,824	-		MIT1002_02498	0.77	-0.4
2,786,828	+		MIT1002_02498	0.77	+0.6
2,786,836	-		MIT1002_02498	0.79	-0.4
2,786,850	+		MIT1002_02498	0.83	+2.5
2,786,851	+		MIT1002_02498	0.83	+1.2
2,786,851	+		MIT1002_02498	0.83	-0.4
2,786,859	-		MIT1002_02498	0.85	-0.2
2,786,961	+				-0.0
2,787,048	+				-0.2
2,787,122	+				+0.5
2,787,161	-				+0.2
2,787,201	+				+1.5
2,787,201	+				-1.1
2,787,203	+				+0.2
2,787,209	-				+0.5
2,787,257	+				+0.2
2,787,332	-				-0.3
2,787,345	+		MIT1002_02499	0.10	-0.3
2,787,353	+		MIT1002_02499	0.11	-0.5
2,787,361	-		MIT1002_02499	0.11	+0.8
2,787,361	-		MIT1002_02499	0.11	+1.0
2,787,361	-		MIT1002_02499	0.11	-1.5
2,787,427	-		MIT1002_02499	0.14	+0.8
2,787,427	-		MIT1002_02499	0.14	+1.3
2,787,432	-		MIT1002_02499	0.15	+0.6
2,787,434	-		MIT1002_02499	0.15	+0.6
2,787,451	+		MIT1002_02499	0.16	-0.2
2,787,459	-		MIT1002_02499	0.16	-0.5
2,787,459	-		MIT1002_02499	0.16	-1.2
2,787,459	-		MIT1002_02499	0.16	+0.7