Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02489

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,774,936	-		MIT1002_02488	0.40	-0.6
2,774,937	+		MIT1002_02488	0.40	+0.1
2,774,937	+		MIT1002_02488	0.40	-1.7
2,774,945	-		MIT1002_02488	0.41	+0.4
2,774,947	+		MIT1002_02488	0.41	-0.1
2,775,027	+		MIT1002_02488	0.46	-0.1
2,775,044	-		MIT1002_02488	0.48	-0.8
2,775,059	+		MIT1002_02488	0.49	+0.9
2,775,059	+		MIT1002_02488	0.49	-1.3
2,775,067	-		MIT1002_02488	0.49	-1.5
2,775,078	+		MIT1002_02488	0.50	+1.1
2,775,084	-		MIT1002_02488	0.50	+0.0
2,775,086	-		MIT1002_02488	0.50	-0.1
2,775,092	-		MIT1002_02488	0.51	-1.6
2,775,224	+		MIT1002_02488	0.60	+0.6
2,775,281	+		MIT1002_02488	0.64	+1.0
2,775,290	-		MIT1002_02488	0.65	-0.0
2,775,347	+		MIT1002_02488	0.69	+0.5
2,775,362	-		MIT1002_02488	0.70	+0.1
2,775,389	-		MIT1002_02488	0.72	+1.1
2,775,400	-		MIT1002_02488	0.72	-0.1
2,775,401	+		MIT1002_02488	0.72	-0.6
2,775,451	+		MIT1002_02488	0.76	+0.8
2,775,455	-		MIT1002_02488	0.76	+1.9
2,775,455	-		MIT1002_02488	0.76	-1.0
2,775,461	+		MIT1002_02488	0.77	-2.2
2,775,487	-		MIT1002_02488	0.78	-0.7
2,775,524	-		MIT1002_02488	0.81	+0.1
2,775,531	-		MIT1002_02488	0.81	+0.0
2,775,558	-		MIT1002_02488	0.83	+0.2
2,775,567	-		MIT1002_02488	0.84	-0.4
2,775,576	+		MIT1002_02488	0.85	+0.3
2,775,576	+		MIT1002_02488	0.85	-0.3
2,775,584	-		MIT1002_02488	0.85	-0.8
2,775,584	-		MIT1002_02488	0.85	+0.3
2,775,584	-		MIT1002_02488	0.85	+0.4
2,775,628	+		MIT1002_02488	0.88	+0.0
2,775,628	+		MIT1002_02488	0.88	-0.2
2,775,636	-		MIT1002_02488	0.89	+0.1
2,775,689	+				-0.5
2,775,699	+				+1.5
2,775,704	+				-0.5
2,775,705	-				-0.0
2,775,728	+				+0.2
2,775,877	+				+0.1
2,775,967	+				-1.5
2,775,975	-				-1.7
2,776,032	+		MIT1002_02489	0.19	-1.5
2,776,083	+		MIT1002_02489	0.27	-0.4
2,776,124	-		MIT1002_02489	0.34	-0.8
2,776,126	+		MIT1002_02489	0.34	-2.5
2,776,126	+		MIT1002_02489	0.34	-1.4
2,776,126	+		MIT1002_02489	0.34	-0.8
2,776,126	+		MIT1002_02489	0.34	-2.2
2,776,131	+		MIT1002_02489	0.35	-1.8
2,776,239	-		MIT1002_02489	0.53	-2.0
2,776,277	+		MIT1002_02489	0.60	-2.7
2,776,295	-		MIT1002_02489	0.63	-1.5
2,776,318	+		MIT1002_02489	0.67	-1.3
2,776,328	+		MIT1002_02489	0.68	-1.3
2,776,336	-		MIT1002_02489	0.70	-1.4
2,776,444	+		MIT1002_02489	0.88	-0.2
2,776,517	+				-0.7
2,776,517	+				-1.8
2,776,524	-				-2.3
2,776,525	-				-0.5
2,776,525	-				-2.5
2,776,525	-				+1.8
2,776,525	-				-2.4
2,776,653	+				-1.4
2,776,676	-				+2.8
2,776,677	-				+1.1
2,776,687	-				+0.9
2,776,765	+				-0.5
2,776,771	+				+0.6
2,776,779	-				-0.1
2,776,792	+				-0.5
2,776,799	-				+1.1
2,776,810	-				-1.5
2,776,841	-				+0.4
2,777,001	+		MIT1002_02490	0.24	-0.2
2,777,023	+		MIT1002_02490	0.26	-1.4
2,777,023	+		MIT1002_02490	0.26	-1.3
2,777,023	+		MIT1002_02490	0.26	+0.7
2,777,031	-		MIT1002_02490	0.26	-0.5
2,777,031	-		MIT1002_02490	0.26	+0.5
2,777,041	-		MIT1002_02490	0.27	-0.7
2,777,058	+		MIT1002_02490	0.29	-0.5
2,777,066	-		MIT1002_02490	0.29	-2.2
2,777,066	-		MIT1002_02490	0.29	+1.8
2,777,066	-		MIT1002_02490	0.29	-1.8
2,777,090	+		MIT1002_02490	0.32	-1.1
2,777,091	+		MIT1002_02490	0.32	+0.0
2,777,124	+		MIT1002_02490	0.35	+0.6
2,777,132	-		MIT1002_02490	0.35	-0.9
2,777,132	-		MIT1002_02490	0.35	-1.1
2,777,234	-		MIT1002_02490	0.45	-2.7
2,777,234	-		MIT1002_02490	0.45	-1.5
2,777,244	-		MIT1002_02490	0.46	+0.4
2,777,244	-		MIT1002_02490	0.46	+0.5
2,777,292	-		MIT1002_02490	0.50	+1.0
2,777,409	+		MIT1002_02490	0.60	-1.4
2,777,498	-		MIT1002_02490	0.68	+0.5