Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02462

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,751,847	+		MIT1002_02461	0.29	+0.3
2,751,916	+		MIT1002_02461	0.35	-0.5
2,751,941	+		MIT1002_02461	0.37	+0.0
2,751,944	-		MIT1002_02461	0.37	+0.2
2,751,947	+		MIT1002_02461	0.38	-0.0
2,751,954	-		MIT1002_02461	0.38	-1.8
2,751,987	-		MIT1002_02461	0.41	+0.6
2,751,994	+		MIT1002_02461	0.42	+0.3
2,752,002	-		MIT1002_02461	0.43	+0.4
2,752,016	+		MIT1002_02461	0.44	-0.3
2,752,017	+		MIT1002_02461	0.44	+0.7
2,752,050	+		MIT1002_02461	0.47	+0.7
2,752,072	+		MIT1002_02461	0.49	+0.1
2,752,139	+		MIT1002_02461	0.55	-0.2
2,752,139	+		MIT1002_02461	0.55	-0.2
2,752,147	-		MIT1002_02461	0.56	-0.2
2,752,147	-		MIT1002_02461	0.56	-0.2
2,752,163	+		MIT1002_02461	0.57	+0.6
2,752,221	+		MIT1002_02461	0.62	+1.7
2,752,232	+		MIT1002_02461	0.63	+0.3
2,752,244	+		MIT1002_02461	0.64	+0.4
2,752,269	+		MIT1002_02461	0.67	+0.3
2,752,320	+		MIT1002_02461	0.71	+0.1
2,752,328	-		MIT1002_02461	0.72	+1.1
2,752,331	+		MIT1002_02461	0.72	-1.3
2,752,366	-		MIT1002_02461	0.76	-0.2
2,752,437	-		MIT1002_02461	0.82	+1.7
2,752,446	+		MIT1002_02461	0.83	-2.0
2,752,454	-		MIT1002_02461	0.83	+0.2
2,752,454	-		MIT1002_02461	0.83	-0.2
2,752,499	-		MIT1002_02461	0.88	-0.1
2,752,503	+		MIT1002_02461	0.88	+0.3
2,752,511	-		MIT1002_02461	0.89	-0.1
2,752,528	-				+0.2
2,752,530	+				-0.3
2,752,581	+				+1.0
2,752,589	-				+1.4
2,752,589	-				-0.1
2,752,602	+				+0.5
2,752,609	+				-0.8
2,752,610	-				-1.2
2,752,610	-				-0.0
2,752,725	-				+0.2
2,752,739	+				-0.4
2,752,755	+				+0.4
2,752,755	+				+0.0
2,752,774	-				-2.1
2,752,941	+				-0.4
2,752,950	+				-0.4
2,753,006	-		MIT1002_02462	0.12	-1.6
2,753,044	+		MIT1002_02462	0.14	+0.2
2,753,063	-		MIT1002_02462	0.15	+1.0
2,753,096	-		MIT1002_02462	0.17	+0.1
2,753,167	+		MIT1002_02462	0.20	+0.5
2,753,208	+		MIT1002_02462	0.23	-0.1
2,753,230	-		MIT1002_02462	0.24	-0.0
2,753,232	+		MIT1002_02462	0.24	-0.8
2,753,267	+		MIT1002_02462	0.26	+0.2
2,753,338	+		MIT1002_02462	0.29	+0.2
2,753,346	-		MIT1002_02462	0.30	-1.4
2,753,346	-		MIT1002_02462	0.30	+0.2
2,753,361	+		MIT1002_02462	0.31	-1.0
2,753,381	-		MIT1002_02462	0.32	+0.2
2,753,511	-		MIT1002_02462	0.39	-0.0
2,753,518	-		MIT1002_02462	0.39	-1.1
2,753,592	-		MIT1002_02462	0.43	-0.1
2,753,709	+		MIT1002_02462	0.49	-0.2
2,753,717	+		MIT1002_02462	0.50	-0.7
2,753,717	-		MIT1002_02462	0.50	-0.6
2,753,717	-		MIT1002_02462	0.50	+0.8
2,753,753	+		MIT1002_02462	0.51	-1.0
2,753,859	+		MIT1002_02462	0.57	-0.5
2,753,924	+		MIT1002_02462	0.61	-0.7
2,753,927	+		MIT1002_02462	0.61	-0.9
2,753,927	+		MIT1002_02462	0.61	-0.1
2,753,930	-		MIT1002_02462	0.61	-2.6
2,753,958	-		MIT1002_02462	0.62	+1.0
2,753,958	-		MIT1002_02462	0.62	+0.0
2,753,987	-		MIT1002_02462	0.64	-0.2
2,754,004	-		MIT1002_02462	0.65	-1.8
2,754,018	-		MIT1002_02462	0.65	-0.2
2,754,052	+		MIT1002_02462	0.67	-0.3
2,754,052	+		MIT1002_02462	0.67	+0.5
2,754,060	-		MIT1002_02462	0.68	-0.1
2,754,060	-		MIT1002_02462	0.68	-0.2
2,754,096	-		MIT1002_02462	0.70	+1.5
2,754,137	-		MIT1002_02462	0.72	-1.8
2,754,184	-		MIT1002_02462	0.74	+0.4
2,754,208	+		MIT1002_02462	0.76	-0.1
2,754,224	+		MIT1002_02462	0.76	-0.1
2,754,405	+		MIT1002_02462	0.86	+0.6
2,754,405	+		MIT1002_02462	0.86	-1.1
2,754,413	-		MIT1002_02462	0.86	+0.6
2,754,421	+		MIT1002_02462	0.87	-0.2
2,754,476	+		MIT1002_02462	0.90	+0.4
2,754,483	-				-0.3
2,754,483	-				-0.2
2,754,484	-				-0.4
2,754,587	-				+0.4
2,754,614	+				-0.4
2,754,838	-				+0.9
2,754,898	+		MIT1002_02463	0.12	+0.9
2,754,898	+		MIT1002_02463	0.12	-0.2
2,754,898	+		MIT1002_02463	0.12	-0.9
2,754,898	+		MIT1002_02463	0.12	-0.8
2,754,906	-		MIT1002_02463	0.14	-0.1
2,754,906	-		MIT1002_02463	0.14	+1.1
2,754,906	-		MIT1002_02463	0.14	+2.1
2,754,906	-		MIT1002_02463	0.14	-1.5
2,754,906	-		MIT1002_02463	0.14	-0.5
2,754,906	-		MIT1002_02463	0.14	-0.6
2,754,932	+		MIT1002_02463	0.18	-0.6
2,754,952	+		MIT1002_02463	0.21	+0.9
2,754,967	-		MIT1002_02463	0.23	+0.2
2,754,977	-		MIT1002_02463	0.24	-2.2
2,754,977	-		MIT1002_02463	0.24	-0.1
2,754,977	-		MIT1002_02463	0.24	+0.2
2,754,979	-		MIT1002_02463	0.25	-0.8
2,754,984	-		MIT1002_02463	0.25	+1.4
2,755,009	-		MIT1002_02463	0.29	+0.3
2,755,031	-		MIT1002_02463	0.32	-1.7
2,755,052	-		MIT1002_02463	0.35	+0.8
2,755,125	+		MIT1002_02463	0.46	+1.0
2,755,125	+		MIT1002_02463	0.46	-0.3
2,755,133	-		MIT1002_02463	0.47	-0.5
2,755,178	+		MIT1002_02463	0.54	-0.6
2,755,187	+		MIT1002_02463	0.56	+0.6
2,755,443	+				+0.5
2,755,443	+				-0.6
2,755,443	+				+0.4
2,755,451	-				+0.1
2,755,602	-				+0.6
2,755,602	-				-0.6
2,755,658	+				+0.4