Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02445

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,726,359	+				+0.1
2,726,409	+		MIT1002_02444	0.10	+0.5
2,726,417	-		MIT1002_02444	0.11	+2.2
2,726,456	+		MIT1002_02444	0.15	+0.0
2,726,468	+		MIT1002_02444	0.17	-2.8
2,726,496	-		MIT1002_02444	0.20	-0.6
2,726,727	-		MIT1002_02444	0.44	-1.4
2,726,750	-		MIT1002_02444	0.47	+1.1
2,726,828	+		MIT1002_02444	0.55	-0.6
2,726,898	-		MIT1002_02444	0.62	-0.6
2,726,946	+		MIT1002_02444	0.68	-1.1
2,726,992	-		MIT1002_02444	0.73	-0.8
2,727,025	+		MIT1002_02444	0.76	-1.1
2,727,084	+		MIT1002_02444	0.82	-1.2
2,727,097	-		MIT1002_02444	0.84	+1.2
2,727,173	-				+0.7
2,727,201	-				+0.4
2,727,201	-				-1.8
2,727,258	-				-0.1
2,727,324	+				+0.5
2,727,324	-				+1.0
2,727,332	-				+0.9
2,727,375	+		MIT1002_02445	0.22	-0.3
2,727,394	+		MIT1002_02445	0.29	-1.5
2,727,457	+				-0.2
2,727,459	+				+1.8
2,727,466	-				-0.2
2,727,505	-				-0.0
2,727,574	+				-0.4
2,727,581	+				-0.0
2,727,582	-				+0.6
2,727,631	+				-2.8
2,727,640	+				-0.2
2,727,642	+				+3.0
2,727,642	+				+0.0
2,727,650	-				-0.1
2,727,688	+				-0.5
2,727,748	+		MIT1002_02446	0.11	-0.4
2,727,748	+		MIT1002_02446	0.11	-2.0
2,727,748	+		MIT1002_02446	0.11	+1.0
2,727,763	-		MIT1002_02446	0.12	-1.0
2,727,770	+		MIT1002_02446	0.12	+2.0
2,727,785	-		MIT1002_02446	0.12	+0.6
2,727,792	+		MIT1002_02446	0.13	-0.1
2,727,812	-		MIT1002_02446	0.13	+2.0
2,727,846	-		MIT1002_02446	0.15	+0.3
2,727,899	-		MIT1002_02446	0.17	+1.1
2,727,970	-		MIT1002_02446	0.19	-2.5
2,728,018	+		MIT1002_02446	0.21	-0.9
2,728,026	-		MIT1002_02446	0.21	+0.0
2,728,198	+		MIT1002_02446	0.28	-1.2
2,728,198	+		MIT1002_02446	0.28	-0.8
2,728,208	+		MIT1002_02446	0.28	-0.2
2,728,208	+		MIT1002_02446	0.28	+1.1
2,728,208	+		MIT1002_02446	0.28	-0.5
2,728,208	+		MIT1002_02446	0.28	+0.2
2,728,216	-		MIT1002_02446	0.28	+0.3
2,728,221	-		MIT1002_02446	0.28	-2.4
2,728,224	+		MIT1002_02446	0.29	+0.8
2,728,224	+		MIT1002_02446	0.29	+0.9
2,728,224	+		MIT1002_02446	0.29	+0.2
2,728,224	+		MIT1002_02446	0.29	-0.3
2,728,224	+		MIT1002_02446	0.29	+0.6
2,728,224	+		MIT1002_02446	0.29	+0.1
2,728,232	-		MIT1002_02446	0.29	-0.3
2,728,234	+		MIT1002_02446	0.29	-1.4
2,728,234	+		MIT1002_02446	0.29	+0.9
2,728,242	-		MIT1002_02446	0.29	-1.6
2,728,242	-		MIT1002_02446	0.29	+1.0
2,728,243	-		MIT1002_02446	0.29	-0.6
2,728,291	-		MIT1002_02446	0.31	-1.5
2,728,356	-		MIT1002_02446	0.33	+0.0
2,728,356	-		MIT1002_02446	0.33	-0.3
2,728,475	-		MIT1002_02446	0.38	+1.3
2,728,477	+		MIT1002_02446	0.38	-0.4
2,728,477	+		MIT1002_02446	0.38	-0.2
2,728,491	+		MIT1002_02446	0.38	-0.4
2,728,557	-		MIT1002_02446	0.41	-1.5
2,728,557	-		MIT1002_02446	0.41	-0.8