Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02427

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,709,092	-				+0.8
2,709,186	-				+1.4
2,709,204	-				-1.6
2,709,221	+		MIT1002_02426	0.12	+0.2
2,709,224	+		MIT1002_02426	0.12	-0.2
2,709,329	-		MIT1002_02426	0.23	-0.1
2,709,329	-		MIT1002_02426	0.23	-0.1
2,709,341	+		MIT1002_02426	0.24	+1.2
2,709,404	+		MIT1002_02426	0.30	+0.2
2,709,462	+		MIT1002_02426	0.36	+1.0
2,709,468	-		MIT1002_02426	0.37	+2.6
2,709,635	+		MIT1002_02426	0.54	-2.2
2,709,635	+		MIT1002_02426	0.54	-0.2
2,709,638	-		MIT1002_02426	0.54	-0.3
2,709,643	-		MIT1002_02426	0.55	+0.6
2,709,645	+		MIT1002_02426	0.55	-0.8
2,709,664	+		MIT1002_02426	0.57	+0.4
2,709,672	-		MIT1002_02426	0.58	+0.9
2,709,688	-		MIT1002_02426	0.59	+0.5
2,709,692	+		MIT1002_02426	0.60	+1.0
2,709,697	+		MIT1002_02426	0.60	-0.3
2,709,699	+		MIT1002_02426	0.60	-0.3
2,709,699	+		MIT1002_02426	0.60	+0.4
2,709,705	-		MIT1002_02426	0.61	+0.5
2,709,705	-		MIT1002_02426	0.61	+0.3
2,709,707	-		MIT1002_02426	0.61	-1.3
2,709,707	-		MIT1002_02426	0.61	+1.2
2,709,707	-		MIT1002_02426	0.61	-1.0
2,709,707	-		MIT1002_02426	0.61	+0.4
2,709,815	-		MIT1002_02426	0.72	+0.6
2,709,857	-		MIT1002_02426	0.76	-1.2
2,709,885	+		MIT1002_02426	0.79	+0.3
2,709,893	-		MIT1002_02426	0.80	+0.5
2,709,893	-		MIT1002_02426	0.80	-1.2
2,710,025	-				+0.7
2,710,027	+				-1.0
2,710,037	+				+1.1
2,710,092	-				+1.2
2,710,119	+				-0.2
2,710,127	-				+2.6
2,710,127	-				-0.6
2,710,127	-				-1.1
2,710,140	-				+0.8
2,710,161	-		MIT1002_02427	0.14	-1.1
2,710,197	+		MIT1002_02427	0.22	-0.2
2,710,219	+		MIT1002_02427	0.26	-0.2
2,710,269	+		MIT1002_02427	0.36	-0.9
2,710,276	-		MIT1002_02427	0.38	+1.0
2,710,293	+		MIT1002_02427	0.41	-3.2
2,710,406	-		MIT1002_02427	0.65	+0.5
2,710,406	-		MIT1002_02427	0.65	-0.2
2,710,413	+		MIT1002_02427	0.66	-0.3
2,710,527	-		MIT1002_02427	0.90	+0.4
2,710,575	+				+2.1
2,710,650	+				+0.2
2,710,658	-				+0.6
2,710,676	+				-2.1
2,710,684	-				+0.7
2,710,707	+		MIT1002_02428	0.10	-0.4
2,710,746	+		MIT1002_02428	0.13	+0.2
2,710,754	-		MIT1002_02428	0.14	+0.4
2,710,787	-		MIT1002_02428	0.16	+0.3
2,710,792	+		MIT1002_02428	0.17	-0.1
2,710,818	+		MIT1002_02428	0.19	+0.2
2,710,862	+		MIT1002_02428	0.22	-0.6
2,710,915	-		MIT1002_02428	0.26	+0.3
2,711,076	+		MIT1002_02428	0.39	+1.3
2,711,089	-		MIT1002_02428	0.40	-0.7
2,711,101	+		MIT1002_02428	0.40	-0.1
2,711,109	-		MIT1002_02428	0.41	+0.6
2,711,109	-		MIT1002_02428	0.41	+0.3
2,711,142	+		MIT1002_02428	0.44	+0.8
2,711,144	-		MIT1002_02428	0.44	+1.0
2,711,187	-		MIT1002_02428	0.47	-0.3
2,711,311	-		MIT1002_02428	0.57	+2.1
2,711,326	+		MIT1002_02428	0.58	+0.4
2,711,326	+		MIT1002_02428	0.58	+0.9
2,711,334	-		MIT1002_02428	0.58	-0.7
2,711,421	+		MIT1002_02428	0.65	+0.0
2,711,429	-		MIT1002_02428	0.66	+1.4