Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02344

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,610,213	-		MIT1002_02342	0.58	+0.9
2,610,246	-		MIT1002_02342	0.60	+0.6
2,610,266	+		MIT1002_02342	0.61	-0.2
2,610,271	+		MIT1002_02342	0.62	+0.8
2,610,330	+		MIT1002_02342	0.66	+1.6
2,610,330	+		MIT1002_02342	0.66	-0.2
2,610,379	+		MIT1002_02342	0.69	-0.2
2,610,405	-		MIT1002_02342	0.71	+0.7
2,610,419	-		MIT1002_02342	0.72	-1.2
2,610,440	-		MIT1002_02342	0.73	-0.7
2,610,466	-		MIT1002_02342	0.75	-0.1
2,610,475	+		MIT1002_02342	0.75	-0.1
2,610,475	+		MIT1002_02342	0.75	+0.4
2,610,483	-		MIT1002_02342	0.76	-0.3
2,610,542	+		MIT1002_02342	0.80	+1.2
2,610,542	+		MIT1002_02342	0.80	-0.1
2,610,550	-		MIT1002_02342	0.80	+0.1
2,610,558	-		MIT1002_02342	0.81	+0.7
2,610,565	+		MIT1002_02342	0.81	-2.0
2,610,674	+		MIT1002_02342	0.89	-2.6
2,610,700	-				-0.8
2,610,721	-				+0.2
2,610,740	-				+0.2
2,610,810	+				-0.3
2,610,911	-		MIT1002_02343	0.26	-0.3
2,610,911	-		MIT1002_02343	0.26	+0.3
2,610,934	-		MIT1002_02343	0.35	-0.6
2,610,962	-		MIT1002_02343	0.47	-0.1
2,610,973	+		MIT1002_02343	0.51	+0.5
2,610,981	-		MIT1002_02343	0.54	+0.4
2,610,985	+		MIT1002_02343	0.56	+0.9
2,610,985	+		MIT1002_02343	0.56	-0.7
2,611,020	+		MIT1002_02343	0.70	-0.2
2,611,020	+		MIT1002_02343	0.70	+1.7
2,611,028	-		MIT1002_02343	0.74	+1.0
2,611,057	-		MIT1002_02343	0.85	+0.6
2,611,106	-				-0.0
2,611,339	-		MIT1002_02344	0.10	-0.3
2,611,339	-		MIT1002_02344	0.10	-0.4
2,611,360	-		MIT1002_02344	0.12	-0.2
2,611,402	-		MIT1002_02344	0.16	+1.9
2,611,416	+		MIT1002_02344	0.17	+0.2
2,611,416	+		MIT1002_02344	0.17	+0.1
2,611,416	+		MIT1002_02344	0.17	+0.4
2,611,416	+		MIT1002_02344	0.17	-0.3
2,611,424	-		MIT1002_02344	0.17	+1.7
2,611,424	-		MIT1002_02344	0.17	+1.3
2,611,479	+		MIT1002_02344	0.22	-0.6
2,611,479	+		MIT1002_02344	0.22	-0.5
2,611,487	-		MIT1002_02344	0.22	-0.3
2,611,487	-		MIT1002_02344	0.22	-1.3
2,611,530	+		MIT1002_02344	0.26	-0.5
2,611,530	+		MIT1002_02344	0.26	+0.4
2,611,538	-		MIT1002_02344	0.27	-0.1
2,611,538	-		MIT1002_02344	0.27	+0.1
2,611,538	-		MIT1002_02344	0.27	+0.4
2,611,538	-		MIT1002_02344	0.27	-2.4
2,611,548	-		MIT1002_02344	0.27	+0.9
2,611,585	-		MIT1002_02344	0.30	+1.1
2,611,620	+		MIT1002_02344	0.33	+0.3
2,611,621	+		MIT1002_02344	0.33	+1.4
2,611,621	+		MIT1002_02344	0.33	+0.9
2,611,629	-		MIT1002_02344	0.34	+0.5
2,611,629	-		MIT1002_02344	0.34	+0.9
2,611,629	-		MIT1002_02344	0.34	-0.5
2,611,629	-		MIT1002_02344	0.34	-1.5
2,611,629	-		MIT1002_02344	0.34	-1.3
2,611,634	-		MIT1002_02344	0.34	-0.8
2,611,639	-		MIT1002_02344	0.35	+1.0
2,611,642	+		MIT1002_02344	0.35	-0.0
2,611,676	-		MIT1002_02344	0.38	+1.3
2,611,739	+		MIT1002_02344	0.43	+0.0
2,611,753	-		MIT1002_02344	0.44	+0.4
2,611,753	-		MIT1002_02344	0.44	+1.2
2,611,797	-		MIT1002_02344	0.48	-0.3
2,611,845	-		MIT1002_02344	0.52	+2.7
2,611,848	+		MIT1002_02344	0.52	-1.9
2,611,848	+		MIT1002_02344	0.52	+0.4
2,611,886	+		MIT1002_02344	0.55	+1.3
2,611,886	+		MIT1002_02344	0.55	+0.7
2,611,916	+		MIT1002_02344	0.57	-1.3
2,611,923	+		MIT1002_02344	0.58	+0.3
2,611,931	-		MIT1002_02344	0.59	+1.0
2,612,078	-		MIT1002_02344	0.70	+0.1
2,612,078	-		MIT1002_02344	0.70	-0.3
2,612,126	-		MIT1002_02344	0.74	+2.2
2,612,258	+		MIT1002_02344	0.85	-0.4
2,612,258	+		MIT1002_02344	0.85	-0.3
2,612,258	+		MIT1002_02344	0.85	+0.7
2,612,266	-		MIT1002_02344	0.86	+1.5
2,612,284	+		MIT1002_02344	0.87	+0.3
2,612,338	+				+0.2
2,612,355	+				-1.6
2,612,365	+				+0.6
2,612,386	-				-1.0
2,612,457	+				+1.3
2,612,526	+				-1.3
2,612,534	-				+0.1
2,612,559	+				-0.3
2,612,663	+				+0.5
2,612,665	+				-0.7
2,612,671	-				-0.3
2,612,746	-		MIT1002_02345	0.14	-0.7
2,612,815	+		MIT1002_02345	0.20	+1.0
2,612,838	+		MIT1002_02345	0.22	+1.2
2,612,838	+		MIT1002_02345	0.22	+1.1
2,612,904	+		MIT1002_02345	0.28	+0.6
2,612,904	+		MIT1002_02345	0.28	-1.9
2,612,909	-		MIT1002_02345	0.28	+1.0
2,612,912	-		MIT1002_02345	0.28	+1.2
2,612,921	+		MIT1002_02345	0.29	-1.0
2,612,929	-		MIT1002_02345	0.30	+0.6
2,612,935	-		MIT1002_02345	0.30	+0.2
2,613,000	-		MIT1002_02345	0.36	-1.4
2,613,039	+		MIT1002_02345	0.39	+0.2
2,613,210	-		MIT1002_02345	0.54	-0.0
2,613,250	+		MIT1002_02345	0.57	+0.2
2,613,250	+		MIT1002_02345	0.57	+0.3
2,613,351	+		MIT1002_02345	0.66	-0.3
2,613,358	-		MIT1002_02345	0.66	-0.4
2,613,359	-		MIT1002_02345	0.66	+0.3
2,613,404	+		MIT1002_02345	0.70	+0.1
2,613,407	-		MIT1002_02345	0.70	+0.4