Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01914

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
2,122,322	-		MIT1002_01913	0.14	-0.2
2,122,347	-		MIT1002_01913	0.17	+0.8
2,122,437	-		MIT1002_01913	0.25	-0.5
2,122,447	+		MIT1002_01913	0.26	-1.5
2,122,455	-		MIT1002_01913	0.27	+0.8
2,122,463	-		MIT1002_01913	0.28	+0.5
2,122,484	-		MIT1002_01913	0.30	-0.7
2,122,530	-		MIT1002_01913	0.34	-1.9
2,122,763	+		MIT1002_01913	0.56	-0.4
2,122,794	-		MIT1002_01913	0.59	-1.7
2,122,817	+		MIT1002_01913	0.62	-0.4
2,122,851	-		MIT1002_01913	0.65	-0.5
2,122,906	+		MIT1002_01913	0.70	+1.3
2,122,906	+		MIT1002_01913	0.70	-2.0
2,122,957	+		MIT1002_01913	0.75	+0.2
2,122,957	+		MIT1002_01913	0.75	-0.6
2,122,970	+		MIT1002_01913	0.76	+0.6
2,122,978	-		MIT1002_01913	0.77	-1.2
2,123,035	+		MIT1002_01913	0.82	-0.8
2,123,057	+		MIT1002_01913	0.84	-0.5
2,123,072	+		MIT1002_01913	0.86	-1.0
2,123,072	+		MIT1002_01913	0.86	-0.2
2,123,072	+		MIT1002_01913	0.86	+0.0
2,123,173	+				-1.4
2,123,195	-				-1.2
2,123,244	-				+0.1
2,123,391	+		MIT1002_01914	0.43	+1.0
2,123,391	+		MIT1002_01914	0.43	+2.1
2,123,399	-		MIT1002_01914	0.47	+0.1
2,123,399	-		MIT1002_01914	0.47	+0.3
2,123,399	-		MIT1002_01914	0.47	-0.2
2,123,399	-		MIT1002_01914	0.47	-0.2
2,123,399	-		MIT1002_01914	0.47	+0.1
2,123,399	-		MIT1002_01914	0.47	+0.5
2,123,399	-		MIT1002_01914	0.47	+0.8
2,123,401	+		MIT1002_01914	0.49	-0.4
2,123,414	+		MIT1002_01914	0.56	-0.3
2,123,414	+		MIT1002_01914	0.56	-0.1
2,123,422	-		MIT1002_01914	0.60	-0.0
2,123,437	-		MIT1002_01914	0.69	+0.5
2,123,437	-		MIT1002_01914	0.69	+0.3
2,123,437	-		MIT1002_01914	0.69	+1.5
2,123,454	-		MIT1002_01914	0.79	+0.9
2,123,549	+				-0.7
2,123,623	-				-0.0
2,123,623	-				-0.5
2,123,627	+				-0.0
2,123,635	-				-0.7
2,123,640	-				+0.5
2,123,644	+				-0.3
2,123,652	-				-0.9
2,123,652	-				+1.1
2,123,652	-				-0.0
2,123,654	-				+0.9
2,123,654	-				+0.3
2,123,680	-		MIT1002_01915	0.13	-0.0
2,123,751	-		MIT1002_01915	0.23	+1.6
2,123,800	+		MIT1002_01915	0.30	-0.1
2,123,960	+		MIT1002_01915	0.53	+0.6
2,123,960	+		MIT1002_01915	0.53	+0.8
2,123,960	+		MIT1002_01915	0.53	+0.5
2,123,960	+		MIT1002_01915	0.53	-0.1
2,123,960	+		MIT1002_01915	0.53	-1.2
2,123,960	+		MIT1002_01915	0.53	-0.4
2,123,960	+		MIT1002_01915	0.53	-1.5
2,123,968	-		MIT1002_01915	0.54	+1.2
2,123,988	+		MIT1002_01915	0.57	+1.4
2,123,988	+		MIT1002_01915	0.57	+0.3
2,124,017	+		MIT1002_01915	0.61	+1.2
2,124,042	-		MIT1002_01915	0.65	-0.3
2,124,054	+		MIT1002_01915	0.67	-0.8
2,124,062	-		MIT1002_01915	0.68	+0.1
2,124,073	+		MIT1002_01915	0.69	-0.0
2,124,145	+		MIT1002_01915	0.80	-0.7
2,124,146	-		MIT1002_01915	0.80	+1.8
2,124,167	+		MIT1002_01915	0.83	+0.3
2,124,232	+				+0.1
2,124,290	+				-1.2
2,124,298	-				-0.6
2,124,323	+				-0.8
2,124,323	+				+0.1
2,124,364	+		MIT1002_01916	0.12	+0.5
2,124,464	-		MIT1002_01916	0.28	+2.2