Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01612

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
1,774,892	+		MIT1002_01610	0.68	+0.6
1,774,900	+		MIT1002_01610	0.69	+0.4
1,774,930	-		MIT1002_01610	0.72	-1.0
1,774,972	-		MIT1002_01610	0.75	-0.5
1,775,002	+		MIT1002_01610	0.78	+0.5
1,775,010	-		MIT1002_01610	0.78	-0.3
1,775,029	-		MIT1002_01610	0.80	-2.2
1,775,039	-		MIT1002_01610	0.81	+0.8
1,775,070	+		MIT1002_01610	0.83	+1.4
1,775,268	-				-0.3
1,775,378	-		MIT1002_01611	0.20	+0.3
1,775,550	+		MIT1002_01611	0.51	-1.0
1,775,578	+		MIT1002_01611	0.56	+0.2
1,775,668	+		MIT1002_01611	0.73	+0.3
1,775,679	+		MIT1002_01611	0.75	-0.4
1,775,689	-		MIT1002_01611	0.77	-0.2
1,775,689	-		MIT1002_01611	0.77	-0.9
1,775,780	-				-0.7
1,775,848	+				-0.2
1,775,860	+				+1.1
1,775,938	+				+0.9
1,775,997	+				+1.0
1,776,157	+		MIT1002_01612	0.14	-3.1
1,776,165	-		MIT1002_01612	0.15	-0.7
1,776,165	-		MIT1002_01612	0.15	-3.1
1,776,197	-		MIT1002_01612	0.16	+1.6
1,776,214	+		MIT1002_01612	0.17	+0.3
1,776,217	-		MIT1002_01612	0.17	+1.7
1,776,234	+		MIT1002_01612	0.18	-0.5
1,776,244	+		MIT1002_01612	0.18	+1.0
1,776,252	-		MIT1002_01612	0.18	-2.2
1,776,334	+		MIT1002_01612	0.22	+0.6
1,776,334	+		MIT1002_01612	0.22	+0.9
1,776,342	-		MIT1002_01612	0.23	+1.0
1,776,342	-		MIT1002_01612	0.23	-0.4
1,776,424	+		MIT1002_01612	0.26	+2.2
1,776,445	+		MIT1002_01612	0.27	+0.2
1,776,447	+		MIT1002_01612	0.27	+0.6
1,776,518	+		MIT1002_01612	0.30	+2.2
1,776,526	-		MIT1002_01612	0.31	-0.2
1,776,533	+		MIT1002_01612	0.31	+0.2
1,776,637	-		MIT1002_01612	0.36	-1.5
1,776,841	-		MIT1002_01612	0.45	+0.5
1,776,841	-		MIT1002_01612	0.45	+1.4
1,776,843	+		MIT1002_01612	0.45	+0.9
1,776,851	-		MIT1002_01612	0.46	-0.5
1,776,878	-		MIT1002_01612	0.47	+0.2
1,776,897	-		MIT1002_01612	0.48	+0.8
1,777,015	+		MIT1002_01612	0.53	+1.0
1,777,111	-		MIT1002_01612	0.57	+0.2
1,777,161	-		MIT1002_01612	0.59	-0.8
1,777,161	-		MIT1002_01612	0.59	+0.3
1,777,161	-		MIT1002_01612	0.59	+0.2
1,777,172	+		MIT1002_01612	0.60	-0.6
1,777,301	+		MIT1002_01612	0.66	-1.1
1,777,309	-		MIT1002_01612	0.66	+1.1
1,777,429	+		MIT1002_01612	0.72	-0.7
1,777,472	-		MIT1002_01612	0.74	-0.5
1,777,497	+		MIT1002_01612	0.75	+0.2
1,777,505	-		MIT1002_01612	0.75	+1.0
1,777,570	+		MIT1002_01612	0.78	+0.9
1,777,588	-		MIT1002_01612	0.79	+0.3
1,777,588	-		MIT1002_01612	0.79	-1.0
1,777,620	+		MIT1002_01612	0.80	-1.4
1,777,627	+		MIT1002_01612	0.81	+0.8
1,777,675	-		MIT1002_01612	0.83	+0.3
1,777,720	-		MIT1002_01612	0.85	-0.4
1,777,776	+		MIT1002_01612	0.87	+0.3
1,777,776	+		MIT1002_01612	0.87	+0.8
1,777,776	+		MIT1002_01612	0.87	+0.6
1,777,776	+		MIT1002_01612	0.87	-1.9
1,777,776	+		MIT1002_01612	0.87	-1.0
1,777,776	+		MIT1002_01612	0.87	-0.9
1,777,776	+		MIT1002_01612	0.87	+1.1
1,777,776	+		MIT1002_01612	0.87	-0.7
1,777,784	-		MIT1002_01612	0.88	-0.5
1,777,784	-		MIT1002_01612	0.88	+1.4
1,777,784	-		MIT1002_01612	0.88	+0.9
1,777,784	-		MIT1002_01612	0.88	-0.9
1,777,784	-		MIT1002_01612	0.88	-1.6
1,777,784	-		MIT1002_01612	0.88	+2.4
1,777,784	-		MIT1002_01612	0.88	-0.1
1,777,784	-		MIT1002_01612	0.88	-0.4
1,777,828	+		MIT1002_01612	0.90	-0.1
1,777,836	+		MIT1002_01612	0.90	+0.5
1,777,843	-				-1.1
1,777,891	-				+1.2
1,777,963	+				+0.1
1,777,963	+				-0.6
1,777,999	+				+0.1
1,777,999	+				+0.5
1,778,007	-				+0.1
1,778,007	-				+0.3
1,778,007	-				+0.1
1,778,082	-				+0.6
1,778,092	-				-0.2
1,778,164	+		MIT1002_01613	0.10	-3.0
1,778,168	-		MIT1002_01613	0.11	-1.5
1,778,196	-		MIT1002_01613	0.15	+0.1
1,778,243	-		MIT1002_01613	0.21	-0.2
1,778,310	-		MIT1002_01613	0.31	-0.7
1,778,412	-		MIT1002_01613	0.45	+0.5
1,778,417	+		MIT1002_01613	0.46	-0.1
1,778,448	-		MIT1002_01613	0.50	+1.3
1,778,477	-		MIT1002_01613	0.54	-0.7
1,778,481	-		MIT1002_01613	0.55	+0.4
1,778,618	+		MIT1002_01613	0.74	-0.7
1,778,626	-		MIT1002_01613	0.75	-0.3
1,778,626	-		MIT1002_01613	0.75	+1.0
1,778,626	-		MIT1002_01613	0.75	+0.6
1,778,679	+		MIT1002_01613	0.83	-0.4
1,778,735	-				+0.1
1,778,774	+				-0.9
1,778,863	+				-1.5
1,778,968	+		MIT1002_01614	0.22	-0.6