Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01533

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
1,684,061	+		MIT1002_01532	0.50	+0.8
1,684,081	+		MIT1002_01532	0.52	+0.8
1,684,117	+		MIT1002_01532	0.56	+0.8
1,684,125	-		MIT1002_01532	0.57	+0.9
1,684,125	-		MIT1002_01532	0.57	+0.8
1,684,166	+		MIT1002_01532	0.61	+0.7
1,684,166	+		MIT1002_01532	0.61	-1.5
1,684,174	-		MIT1002_01532	0.62	+0.0
1,684,192	+		MIT1002_01532	0.64	-0.5
1,684,394	+		MIT1002_01532	0.85	-0.1
1,684,402	-		MIT1002_01532	0.86	+0.3
1,684,402	-		MIT1002_01532	0.86	+0.9
1,684,451	-				-0.6
1,684,548	+				+0.2
1,684,562	+				-0.1
1,684,562	+				+0.1
1,684,562	+				+0.3
1,684,562	+				-0.3
1,684,570	-				-0.0
1,684,574	+				-0.4
1,684,582	-				-1.5
1,684,582	-				+0.6
1,684,582	-				-0.4
1,684,582	-				+0.1
1,684,582	-				+0.5
1,684,634	+				-0.6
1,684,683	-				+0.6
1,684,684	-				+1.1
1,684,709	+				+0.1
1,684,802	-				-0.0
1,684,985	-				-0.1
1,685,010	-				+0.9
1,685,124	+		MIT1002_01533	0.11	-0.6
1,685,169	-		MIT1002_01533	0.17	-3.3
1,685,171	-		MIT1002_01533	0.17	-0.2
1,685,223	-		MIT1002_01533	0.24	-2.7
1,685,297	-		MIT1002_01533	0.33	-2.3
1,685,302	-		MIT1002_01533	0.34	-0.8
1,685,307	+		MIT1002_01533	0.35	-1.3
1,685,338	-		MIT1002_01533	0.39	-2.8
1,685,569	-		MIT1002_01533	0.68	-3.0
1,685,569	-		MIT1002_01533	0.68	-2.9
1,685,659	+		MIT1002_01533	0.80	-0.2
1,685,688	-		MIT1002_01533	0.83	-0.8
1,685,819	-				+0.8
1,685,829	+				-0.5
1,685,837	-				-2.0
1,685,871	+				-3.3
1,685,914	+				+0.4
1,685,914	+				-0.8
1,685,922	-				+1.1
1,685,941	+				+0.3
1,685,941	+				-1.1
1,686,009	+				-1.4
1,686,017	-				+0.7
1,686,041	+		MIT1002_01534	0.11	-1.0
1,686,041	+		MIT1002_01534	0.11	-3.7
1,686,049	-		MIT1002_01534	0.11	-2.1
1,686,183	+		MIT1002_01534	0.19	-0.7
1,686,200	-		MIT1002_01534	0.20	-1.4
1,686,233	-		MIT1002_01534	0.22	-0.5
1,686,263	-		MIT1002_01534	0.24	-0.8
1,686,277	+		MIT1002_01534	0.25	+0.2
1,686,286	-		MIT1002_01534	0.25	-1.0
1,686,299	-		MIT1002_01534	0.26	-0.5
1,686,326	-		MIT1002_01534	0.28	-2.4
1,686,489	+		MIT1002_01534	0.38	+0.6
1,686,505	-		MIT1002_01534	0.39	-0.0
1,686,571	+		MIT1002_01534	0.43	+0.7
1,686,579	-		MIT1002_01534	0.43	+0.9
1,686,599	+		MIT1002_01534	0.44	-1.7
1,686,606	-		MIT1002_01534	0.45	+0.8
1,686,607	-		MIT1002_01534	0.45	-1.5
1,686,644	-		MIT1002_01534	0.47	+1.5
1,686,665	+		MIT1002_01534	0.48	+0.3
1,686,710	-		MIT1002_01534	0.51	-0.7
1,686,779	+		MIT1002_01534	0.55	+0.9