Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01468

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
1,624,615	-		MIT1002_01467	0.73	-0.8
1,624,624	-		MIT1002_01467	0.73	-7.0
1,624,629	+		MIT1002_01467	0.73	-0.8
1,624,654	-		MIT1002_01467	0.74	-2.9
1,624,701	+		MIT1002_01467	0.75	-3.2
1,624,738	-		MIT1002_01467	0.77	-4.3
1,624,787	+		MIT1002_01467	0.78	-3.1
1,624,795	-		MIT1002_01467	0.78	-1.4
1,624,795	-		MIT1002_01467	0.78	-1.7
1,624,795	-		MIT1002_01467	0.78	-1.0
1,624,802	-		MIT1002_01467	0.79	-3.5
1,624,904	-		MIT1002_01467	0.82	-4.2
1,624,921	+		MIT1002_01467	0.82	-2.9
1,624,931	-		MIT1002_01467	0.83	-2.9
1,624,962	+		MIT1002_01467	0.84	-3.5
1,624,970	+		MIT1002_01467	0.84	-3.4
1,624,978	-		MIT1002_01467	0.84	-2.2
1,624,988	+		MIT1002_01467	0.84	-2.6
1,624,989	-		MIT1002_01467	0.84	-3.2
1,625,014	+		MIT1002_01467	0.85	-2.8
1,625,026	+		MIT1002_01467	0.86	-3.1
1,625,043	+		MIT1002_01467	0.86	-0.2
1,625,344	+				-4.6
1,625,344	+				-2.8
1,625,344	+				-3.8
1,625,344	+				-1.7
1,625,344	+				-4.0
1,625,352	-				-4.5
1,625,375	+				-1.4
1,625,383	-				-2.8
1,625,406	+				-4.6
1,625,467	+				-0.5
1,625,509	+				+0.6
1,625,510	+				-0.1
1,625,612	-				+2.0
1,625,724	-		MIT1002_01468	0.24	+2.5
1,625,748	+		MIT1002_01468	0.29	+2.4
1,625,800	+		MIT1002_01468	0.40	+1.8
1,625,878	+		MIT1002_01468	0.57	+1.1
1,626,092	+				-1.2
1,626,100	-				+0.5
1,626,108	-				-0.0
1,626,114	+				+1.6
1,626,208	+				+0.3
1,626,213	+				+0.3
1,626,213	+				-0.0
1,626,342	+				+0.8
1,626,352	+				-1.3
1,626,368	-				-1.5
1,626,374	+				+0.9
1,626,379	+				+0.7
1,626,444	+				+0.7
1,626,450	+				+0.3
1,626,451	+				-0.0
1,626,459	-				+1.2
1,626,486	-		MIT1002_01469	0.10	-2.0
1,626,519	-		MIT1002_01469	0.12	-0.0
1,626,519	-		MIT1002_01469	0.12	-1.2
1,626,553	-		MIT1002_01469	0.14	-1.4
1,626,561	-		MIT1002_01469	0.14	-0.7
1,626,608	-		MIT1002_01469	0.17	+0.3
1,626,665	+		MIT1002_01469	0.20	+1.4
1,626,685	-		MIT1002_01469	0.21	+0.5
1,626,935	+		MIT1002_01469	0.34	+0.3
1,627,013	-		MIT1002_01469	0.39	-1.0
1,627,028	+		MIT1002_01469	0.39	-0.8
1,627,055	+		MIT1002_01469	0.41	-0.8
1,627,081	+		MIT1002_01469	0.42	-0.4