Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01168

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01166 and MIT1002_01167 are separated by 1 nucleotidesMIT1002_01167 and MIT1002_01168 are separated by 2 nucleotidesMIT1002_01168 and MIT1002_01169 are separated by 230 nucleotides MIT1002_01166: MIT1002_01166 - biopolymer transport protein ExbD, at 1,282,126 to 1,282,524 _01166 MIT1002_01167: MIT1002_01167 - transport protein TonB, at 1,282,526 to 1,283,137 _01167 MIT1002_01168: MIT1002_01168 - Flp pilus assembly protein TadD, contains TPR repeats, at 1,283,140 to 1,284,405 _01168 MIT1002_01169: MIT1002_01169 - tRNA(Met) cytidine acetyltransferase TmcA, at 1,284,636 to 1,286,897 _01169 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -2 -1 0 1at 1282.484 kb on - strand, within MIT1002_01166at 1282.726 kb on - strand, within MIT1002_01167at 1282.848 kb on + strand, within MIT1002_01167at 1283.215 kb on + strandat 1283.391 kb on + strand, within MIT1002_01168at 1283.437 kb on + strand, within MIT1002_01168at 1283.516 kb on - strand, within MIT1002_01168at 1284.207 kb on - strand, within MIT1002_01168at 1284.234 kb on - strand, within MIT1002_01168at 1284.285 kb on + strandat 1284.521 kb on - strandat 1284.523 kb on + strandat 1284.523 kb on + strandat 1284.531 kb on - strandat 1284.579 kb on + strandat 1284.648 kb on + strandat 1284.691 kb on - strandat 1284.819 kb on - strandat 1284.822 kb on - strandat 1284.829 kb on - strandat 1284.848 kb on - strandat 1284.870 kb on - strand, within MIT1002_01169at 1284.870 kb on - strand, within MIT1002_01169at 1284.917 kb on + strand, within MIT1002_01169at 1284.993 kb on + strand, within MIT1002_01169at 1285.022 kb on + strand, within MIT1002_01169at 1285.062 kb on + strand, within MIT1002_01169at 1285.070 kb on - strand, within MIT1002_01169at 1285.092 kb on + strand, within MIT1002_01169at 1285.261 kb on + strand, within MIT1002_01169at 1285.261 kb on + strand, within MIT1002_01169at 1285.261 kb on + strand, within MIT1002_01169at 1285.261 kb on + strand, within MIT1002_01169at 1285.261 kb on + strand, within MIT1002_01169at 1285.261 kb on + strand, within MIT1002_01169at 1285.262 kb on - strand, within MIT1002_01169at 1285.262 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.269 kb on - strand, within MIT1002_01169at 1285.294 kb on - strand, within MIT1002_01169at 1285.317 kb on - strand, within MIT1002_01169at 1285.336 kb on + strand, within MIT1002_01169at 1285.363 kb on - strand, within MIT1002_01169

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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1,282,484 - MIT1002_01166 0.90 -0.4
1,282,726 - MIT1002_01167 0.33 -0.1
1,282,848 + MIT1002_01167 0.53 -1.8
1,283,215 + +0.3
1,283,391 + MIT1002_01168 0.20 -1.1
1,283,437 + MIT1002_01168 0.23 +0.9
1,283,516 - MIT1002_01168 0.30 -0.9
1,284,207 - MIT1002_01168 0.84 -1.4
1,284,234 - MIT1002_01168 0.86 -1.4
1,284,285 + +0.0
1,284,521 - +0.6
1,284,523 + +0.6
1,284,523 + -1.5
1,284,531 - +1.3
1,284,579 + -0.5
1,284,648 + +0.3
1,284,691 - -0.9
1,284,819 - +0.3
1,284,822 - +0.2
1,284,829 - -0.5
1,284,848 - -2.7
1,284,870 - MIT1002_01169 0.10 -0.5
1,284,870 - MIT1002_01169 0.10 -0.5
1,284,917 + MIT1002_01169 0.12 +0.4
1,284,993 + MIT1002_01169 0.16 -2.7
1,285,022 + MIT1002_01169 0.17 -0.9
1,285,062 + MIT1002_01169 0.19 -1.1
1,285,070 - MIT1002_01169 0.19 -0.1
1,285,092 + MIT1002_01169 0.20 -0.1
1,285,261 + MIT1002_01169 0.28 -0.2
1,285,261 + MIT1002_01169 0.28 +1.7
1,285,261 + MIT1002_01169 0.28 +0.8
1,285,261 + MIT1002_01169 0.28 +0.2
1,285,261 + MIT1002_01169 0.28 +0.1
1,285,261 + MIT1002_01169 0.28 -0.5
1,285,262 - MIT1002_01169 0.28 +0.4
1,285,262 - MIT1002_01169 0.28 +0.8
1,285,269 - MIT1002_01169 0.28 -0.3
1,285,269 - MIT1002_01169 0.28 +0.7
1,285,269 - MIT1002_01169 0.28 +0.1
1,285,269 - MIT1002_01169 0.28 -1.8
1,285,269 - MIT1002_01169 0.28 +0.3
1,285,269 - MIT1002_01169 0.28 +0.1
1,285,269 - MIT1002_01169 0.28 -1.4
1,285,269 - MIT1002_01169 0.28 -0.5
1,285,269 - MIT1002_01169 0.28 -0.3
1,285,269 - MIT1002_01169 0.28 -0.4
1,285,269 - MIT1002_01169 0.28 -0.1
1,285,294 - MIT1002_01169 0.29 -1.5
1,285,317 - MIT1002_01169 0.30 +0.0
1,285,336 + MIT1002_01169 0.31 +0.3
1,285,363 - MIT1002_01169 0.32 -1.2

Or see this region's nucleotide sequence