Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01110

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
1,217,327	+		MIT1002_01108	0.84	+0.9
1,217,332	+		MIT1002_01108	0.84	+0.8
1,217,335	-		MIT1002_01108	0.85	-0.3
1,217,349	+		MIT1002_01108	0.87	-0.6
1,217,363	+		MIT1002_01108	0.88	+0.2
1,217,371	-		MIT1002_01108	0.89	+1.5
1,217,371	-		MIT1002_01108	0.89	-1.2
1,217,418	-				-0.0
1,217,437	+				+0.3
1,217,474	+				-0.7
1,217,500	-				+0.1
1,217,543	-		MIT1002_01109	0.10	-0.3
1,217,588	-		MIT1002_01109	0.16	-0.3
1,217,676	-		MIT1002_01109	0.27	+0.5
1,217,765	+		MIT1002_01109	0.38	-1.0
1,217,765	+		MIT1002_01109	0.38	-0.1
1,217,765	+		MIT1002_01109	0.38	-0.0
1,217,773	-		MIT1002_01109	0.39	+0.7
1,217,773	-		MIT1002_01109	0.39	-0.9
1,217,773	-		MIT1002_01109	0.39	-1.6
1,217,773	-		MIT1002_01109	0.39	+1.5
1,217,808	-		MIT1002_01109	0.43	+0.1
1,217,858	-		MIT1002_01109	0.49	+0.3
1,217,858	-		MIT1002_01109	0.49	-1.1
1,217,886	-		MIT1002_01109	0.53	+0.8
1,217,935	+		MIT1002_01109	0.59	-2.0
1,217,943	+		MIT1002_01109	0.60	+1.3
1,217,951	-		MIT1002_01109	0.61	-1.4
1,217,966	+		MIT1002_01109	0.63	-0.5
1,217,969	-		MIT1002_01109	0.63	-0.4
1,218,058	-		MIT1002_01109	0.74	+0.6
1,218,076	+		MIT1002_01109	0.76	+0.9
1,218,157	+		MIT1002_01109	0.86	-0.2
1,218,341	+		MIT1002_01110	0.12	-0.4
1,218,343	+		MIT1002_01110	0.12	-0.1
1,218,408	-		MIT1002_01110	0.25	+0.6
1,218,432	-		MIT1002_01110	0.30	-0.2
1,218,440	-		MIT1002_01110	0.32	-1.5
1,218,466	-		MIT1002_01110	0.37	-0.2
1,218,479	+		MIT1002_01110	0.40	-0.4
1,218,513	-		MIT1002_01110	0.47	-1.1
1,218,589	-		MIT1002_01110	0.62	+0.0
1,218,623	+		MIT1002_01110	0.69	-1.0
1,218,631	-		MIT1002_01110	0.71	+0.2
1,218,638	-		MIT1002_01110	0.72	+0.2
1,218,641	+		MIT1002_01110	0.73	-0.9
1,218,653	+		MIT1002_01110	0.75	-1.0
1,218,653	+		MIT1002_01110	0.75	-0.1
1,218,661	-		MIT1002_01110	0.77	+0.4
1,218,757	-				+1.1
1,218,760	-				+0.9
1,218,797	+				-0.2
1,218,823	+				+0.6
1,218,823	+				+0.5
1,218,823	+				+0.1
1,218,824	+				-0.3
1,218,824	+				+0.1
1,218,831	-				-1.1
1,218,832	-				+0.6
1,218,852	+				+0.0
1,218,891	+		MIT1002_01111	0.13	-0.5
1,218,899	-		MIT1002_01111	0.15	+0.2
1,218,911	+		MIT1002_01111	0.18	-0.5
1,218,928	-		MIT1002_01111	0.22	-0.5
1,219,001	-		MIT1002_01111	0.38	-0.1
1,219,048	+		MIT1002_01111	0.49	+0.2
1,219,056	-		MIT1002_01111	0.51	-0.6
1,219,056	-		MIT1002_01111	0.51	-0.5
1,219,056	-		MIT1002_01111	0.51	-1.0
1,219,056	-		MIT1002_01111	0.51	-0.1
1,219,056	-		MIT1002_01111	0.51	-0.6
1,219,334	+				-3.4
1,219,334	+				-4.1
1,219,334	+				-3.3
1,219,334	+				-2.6
1,219,349	-				-3.5
1,219,368	+				-5.6
1,219,383	-				-2.8
1,219,384	-				-4.1
1,219,384	-				-3.2
1,219,408	-				-2.7
1,219,423	-				-2.7
1,219,449	+				-5.4
1,219,449	+				-4.7
1,219,454	+				-0.4
1,219,536	+		MIT1002_01112	0.17	-2.0
1,219,558	-		MIT1002_01112	0.19	-2.4
1,219,636	-		MIT1002_01112	0.27	-0.4
1,219,684	+		MIT1002_01112	0.32	-2.8
1,219,737	-		MIT1002_01112	0.38	-3.6