Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01086

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
1,193,492	+		MIT1002_01085	0.48	-0.7
1,193,526	+		MIT1002_01085	0.50	+0.1
1,193,631	+		MIT1002_01085	0.56	+1.4
1,193,663	+		MIT1002_01085	0.58	-0.8
1,193,714	+		MIT1002_01085	0.61	-0.6
1,193,714	+		MIT1002_01085	0.61	-0.5
1,193,768	-		MIT1002_01085	0.64	-1.4
1,193,800	-		MIT1002_01085	0.66	-0.3
1,193,850	+		MIT1002_01085	0.69	-1.1
1,193,850	+		MIT1002_01085	0.69	+0.2
1,193,869	+		MIT1002_01085	0.70	+1.1
1,193,869	+		MIT1002_01085	0.70	-1.3
1,193,869	+		MIT1002_01085	0.70	-0.6
1,193,877	-		MIT1002_01085	0.71	-1.0
1,193,877	-		MIT1002_01085	0.71	-1.2
1,193,886	+		MIT1002_01085	0.71	-1.0
1,193,919	-		MIT1002_01085	0.73	-1.1
1,193,921	+		MIT1002_01085	0.73	-0.1
1,193,921	-		MIT1002_01085	0.73	+0.1
1,194,071	+		MIT1002_01085	0.82	-1.4
1,194,079	-		MIT1002_01085	0.83	-0.3
1,194,108	+		MIT1002_01085	0.84	-0.1
1,194,111	-		MIT1002_01085	0.84	-0.2
1,194,116	-		MIT1002_01085	0.85	-0.4
1,194,145	-		MIT1002_01085	0.86	+0.3
1,194,225	+				-0.1
1,194,262	+				+0.1
1,194,279	+				+0.0
1,194,317	-				-1.7
1,194,317	-				+1.2
1,194,350	+				+0.4
1,194,353	-				-0.6
1,194,353	-				-1.1
1,194,353	-				-1.2
1,194,363	-				-0.2
1,194,383	+				-1.5
1,194,391	-				-0.2
1,194,452	-				-0.1
1,194,483	+				+0.3
1,194,541	+		MIT1002_01086	0.15	-0.5
1,194,638	-		MIT1002_01086	0.24	-1.1
1,194,689	+		MIT1002_01086	0.29	-0.8
1,194,697	-		MIT1002_01086	0.30	-0.4
1,194,702	+		MIT1002_01086	0.30	-0.2
1,194,741	+		MIT1002_01086	0.34	-0.7
1,194,741	+		MIT1002_01086	0.34	+0.7
1,194,749	-		MIT1002_01086	0.35	-0.4
1,194,749	-		MIT1002_01086	0.35	-0.0
1,194,749	-		MIT1002_01086	0.35	+0.8
1,194,782	-		MIT1002_01086	0.38	-1.2
1,194,986	-		MIT1002_01086	0.58	-0.5
1,194,991	-		MIT1002_01086	0.58	-1.6
1,195,040	-		MIT1002_01086	0.63	-1.3
1,195,042	+		MIT1002_01086	0.63	-3.3
1,195,165	-		MIT1002_01086	0.75	-2.2
1,195,165	-		MIT1002_01086	0.75	+0.1
1,195,188	+		MIT1002_01086	0.77	+2.1
1,195,205	+		MIT1002_01086	0.79	-0.7
1,195,205	+		MIT1002_01086	0.79	-0.6
1,195,205	+		MIT1002_01086	0.79	-1.2
1,195,205	+		MIT1002_01086	0.79	-0.1
1,195,205	+		MIT1002_01086	0.79	-0.8
1,195,213	-		MIT1002_01086	0.79	-0.1
1,195,213	-		MIT1002_01086	0.79	-0.6
1,195,213	-		MIT1002_01086	0.79	+0.3
1,195,213	-		MIT1002_01086	0.79	-0.8
1,195,214	+		MIT1002_01086	0.79	-0.5
1,195,222	-		MIT1002_01086	0.80	-0.2
1,195,291	-		MIT1002_01086	0.87	-0.8
1,195,309	+		MIT1002_01086	0.89	+0.9
1,195,309	+		MIT1002_01086	0.89	-0.2
1,195,328	+				-1.0
1,195,336	-				-0.5
1,195,422	+				-1.4
1,195,455	-				+0.2
1,195,455	-				-0.7
1,195,541	+				-0.8
1,195,551	-		MIT1002_01087	0.11	-1.1
1,195,610	+		MIT1002_01087	0.18	-0.1
1,195,667	-		MIT1002_01087	0.26	-0.3
1,195,688	-		MIT1002_01087	0.28	+0.6
1,195,750	-		MIT1002_01087	0.36	-2.8
1,195,796	-		MIT1002_01087	0.42	-0.7
1,195,803	-		MIT1002_01087	0.43	-0.3
1,195,803	-		MIT1002_01087	0.43	-1.8
1,195,848	-		MIT1002_01087	0.49	+0.3
1,195,960	-		MIT1002_01087	0.63	-0.1
1,195,965	-		MIT1002_01087	0.64	-1.7
1,196,004	-		MIT1002_01087	0.69	+0.2
1,196,158	-		MIT1002_01087	0.88	-0.7
1,196,192	-				-0.8
1,196,226	+				+0.5
1,196,252	-				-0.6
1,196,252	-				-0.2
1,196,257	-				-2.2
1,196,335	+				+1.4
1,196,336	+				-1.3
1,196,344	-				-0.7