Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01056

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01054 and MIT1002_01055 are separated by 78 nucleotidesMIT1002_01055 and MIT1002_01056 are separated by 27 nucleotidesMIT1002_01056 and MIT1002_01057 are separated by 43 nucleotidesMIT1002_01057 and MIT1002_01058 overlap by 8 nucleotidesMIT1002_01058 and MIT1002_01059 are separated by 205 nucleotides MIT1002_01054: MIT1002_01054 - A-type flagellin, at 1,165,016 to 1,165,987 _01054 MIT1002_01055: MIT1002_01055 - flagellar protein FlaG, at 1,166,066 to 1,166,557 _01055 MIT1002_01056: MIT1002_01056 - Flagellar cap protein, at 1,166,585 to 1,168,000 _01056 MIT1002_01057: MIT1002_01057 - Flagellar protein FliS, at 1,168,044 to 1,168,472 _01057 MIT1002_01058: MIT1002_01058 - hypothetical protein, at 1,168,465 to 1,168,761 _01058 MIT1002_01059: MIT1002_01059 - hypothetical protein, at 1,168,967 to 1,171,081 _01059 Position (kb) 1166 1167 1168 1169Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1165.855 kb on - strand, within MIT1002_01054at 1165.888 kb on + strand, within MIT1002_01054at 1165.943 kb on - strandat 1165.943 kb on - strandat 1165.967 kb on + strandat 1165.975 kb on - strandat 1166.051 kb on + strandat 1166.058 kb on - strandat 1166.097 kb on - strandat 1166.121 kb on + strand, within MIT1002_01055at 1166.129 kb on - strand, within MIT1002_01055at 1166.134 kb on - strand, within MIT1002_01055at 1166.159 kb on - strand, within MIT1002_01055at 1166.280 kb on - strand, within MIT1002_01055at 1166.356 kb on - strand, within MIT1002_01055at 1166.427 kb on + strand, within MIT1002_01055at 1166.493 kb on + strand, within MIT1002_01055at 1166.613 kb on + strandat 1166.621 kb on - strandat 1166.697 kb on + strandat 1166.705 kb on - strandat 1166.716 kb on + strandat 1166.724 kb on - strandat 1166.724 kb on - strandat 1166.724 kb on - strandat 1166.724 kb on - strandat 1166.724 kb on - strandat 1166.815 kb on + strand, within MIT1002_01056at 1166.816 kb on - strand, within MIT1002_01056at 1166.886 kb on - strand, within MIT1002_01056at 1166.891 kb on - strand, within MIT1002_01056at 1166.923 kb on + strand, within MIT1002_01056at 1166.926 kb on - strand, within MIT1002_01056at 1166.928 kb on + strand, within MIT1002_01056at 1166.946 kb on + strand, within MIT1002_01056at 1166.955 kb on - strand, within MIT1002_01056at 1166.963 kb on + strand, within MIT1002_01056at 1166.986 kb on + strand, within MIT1002_01056at 1166.994 kb on - strand, within MIT1002_01056at 1166.994 kb on - strand, within MIT1002_01056at 1167.012 kb on + strand, within MIT1002_01056at 1167.065 kb on + strand, within MIT1002_01056at 1167.210 kb on - strand, within MIT1002_01056at 1167.210 kb on - strand, within MIT1002_01056at 1167.223 kb on + strand, within MIT1002_01056at 1167.228 kb on + strand, within MIT1002_01056at 1167.234 kb on - strand, within MIT1002_01056at 1167.338 kb on + strand, within MIT1002_01056at 1167.348 kb on + strand, within MIT1002_01056at 1167.353 kb on + strand, within MIT1002_01056at 1167.353 kb on + strand, within MIT1002_01056at 1167.393 kb on + strand, within MIT1002_01056at 1167.393 kb on + strand, within MIT1002_01056at 1167.416 kb on - strand, within MIT1002_01056at 1167.416 kb on - strand, within MIT1002_01056at 1167.488 kb on - strand, within MIT1002_01056at 1167.521 kb on + strand, within MIT1002_01056at 1167.587 kb on - strand, within MIT1002_01056at 1167.678 kb on + strand, within MIT1002_01056at 1167.727 kb on + strand, within MIT1002_01056at 1167.764 kb on + strand, within MIT1002_01056at 1167.772 kb on + strand, within MIT1002_01056at 1167.772 kb on - strand, within MIT1002_01056at 1167.777 kb on + strand, within MIT1002_01056at 1167.786 kb on + strand, within MIT1002_01056at 1167.786 kb on + strand, within MIT1002_01056at 1167.794 kb on - strand, within MIT1002_01056at 1167.795 kb on + strand, within MIT1002_01056at 1167.795 kb on + strand, within MIT1002_01056at 1167.795 kb on + strand, within MIT1002_01056at 1167.795 kb on + strand, within MIT1002_01056at 1167.803 kb on - strand, within MIT1002_01056at 1167.803 kb on - strand, within MIT1002_01056at 1167.868 kb on - strandat 1167.911 kb on + strandat 1167.919 kb on - strandat 1168.057 kb on - strandat 1168.057 kb on - strandat 1168.089 kb on + strand, within MIT1002_01057at 1168.116 kb on - strand, within MIT1002_01057at 1168.127 kb on - strand, within MIT1002_01057at 1168.149 kb on - strand, within MIT1002_01057at 1168.243 kb on + strand, within MIT1002_01057at 1168.431 kb on + strandat 1168.456 kb on - strandat 1168.456 kb on - strandat 1168.518 kb on + strand, within MIT1002_01058at 1168.518 kb on + strand, within MIT1002_01058at 1168.528 kb on - strand, within MIT1002_01058at 1168.551 kb on + strand, within MIT1002_01058at 1168.569 kb on - strand, within MIT1002_01058at 1168.585 kb on + strand, within MIT1002_01058at 1168.608 kb on - strand, within MIT1002_01058at 1168.613 kb on - strand, within MIT1002_01058at 1168.646 kb on - strand, within MIT1002_01058at 1168.663 kb on + strand, within MIT1002_01058at 1168.663 kb on + strand, within MIT1002_01058at 1168.663 kb on + strand, within MIT1002_01058at 1168.669 kb on - strand, within MIT1002_01058at 1168.669 kb on - strand, within MIT1002_01058at 1168.673 kb on + strand, within MIT1002_01058at 1168.678 kb on + strand, within MIT1002_01058at 1168.678 kb on + strand, within MIT1002_01058at 1168.681 kb on - strand, within MIT1002_01058at 1168.686 kb on - strand, within MIT1002_01058at 1168.743 kb on - strandat 1168.795 kb on + strandat 1168.806 kb on + strandat 1168.806 kb on + strandat 1168.806 kb on + strandat 1168.806 kb on + strandat 1168.806 kb on + strandat 1168.814 kb on - strandat 1168.815 kb on - strandat 1168.887 kb on - strandat 1168.887 kb on - strandat 1168.895 kb on + strandat 1168.911 kb on - strandat 1168.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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1,165,855 - MIT1002_01054 0.86 +0.3
1,165,888 + MIT1002_01054 0.90 -1.2
1,165,943 - -0.3
1,165,943 - +0.4
1,165,967 + -0.8
1,165,975 - -0.4
1,166,051 + +0.8
1,166,058 - -0.2
1,166,097 - -0.3
1,166,121 + MIT1002_01055 0.11 +0.1
1,166,129 - MIT1002_01055 0.13 -1.2
1,166,134 - MIT1002_01055 0.14 -1.5
1,166,159 - MIT1002_01055 0.19 -0.4
1,166,280 - MIT1002_01055 0.43 +0.2
1,166,356 - MIT1002_01055 0.59 -0.1
1,166,427 + MIT1002_01055 0.73 -0.3
1,166,493 + MIT1002_01055 0.87 -0.3
1,166,613 + -0.5
1,166,621 - +1.1
1,166,697 + -0.4
1,166,705 - -0.2
1,166,716 + +1.6
1,166,724 - -0.1
1,166,724 - +1.8
1,166,724 - +1.1
1,166,724 - -0.6
1,166,724 - -0.6
1,166,815 + MIT1002_01056 0.16 +1.3
1,166,816 - MIT1002_01056 0.16 -1.0
1,166,886 - MIT1002_01056 0.21 -0.6
1,166,891 - MIT1002_01056 0.22 +1.8
1,166,923 + MIT1002_01056 0.24 +1.0
1,166,926 - MIT1002_01056 0.24 -0.6
1,166,928 + MIT1002_01056 0.24 -1.3
1,166,946 + MIT1002_01056 0.25 -0.2
1,166,955 - MIT1002_01056 0.26 +1.4
1,166,963 + MIT1002_01056 0.27 +1.2
1,166,986 + MIT1002_01056 0.28 +0.4
1,166,994 - MIT1002_01056 0.29 +2.0
1,166,994 - MIT1002_01056 0.29 +0.2
1,167,012 + MIT1002_01056 0.30 -0.2
1,167,065 + MIT1002_01056 0.34 +0.1
1,167,210 - MIT1002_01056 0.44 -0.2
1,167,210 - MIT1002_01056 0.44 +0.8
1,167,223 + MIT1002_01056 0.45 -0.1
1,167,228 + MIT1002_01056 0.45 +0.2
1,167,234 - MIT1002_01056 0.46 -1.8
1,167,338 + MIT1002_01056 0.53 -1.0
1,167,348 + MIT1002_01056 0.54 -0.8
1,167,353 + MIT1002_01056 0.54 +0.1
1,167,353 + MIT1002_01056 0.54 -1.0
1,167,393 + MIT1002_01056 0.57 -1.3
1,167,393 + MIT1002_01056 0.57 -0.3
1,167,416 - MIT1002_01056 0.59 +0.5
1,167,416 - MIT1002_01056 0.59 +0.8
1,167,488 - MIT1002_01056 0.64 +0.3
1,167,521 + MIT1002_01056 0.66 +0.6
1,167,587 - MIT1002_01056 0.71 +0.8
1,167,678 + MIT1002_01056 0.77 +1.0
1,167,727 + MIT1002_01056 0.81 +0.4
1,167,764 + MIT1002_01056 0.83 +0.4
1,167,772 + MIT1002_01056 0.84 +1.6
1,167,772 - MIT1002_01056 0.84 -0.5
1,167,777 + MIT1002_01056 0.84 -0.5
1,167,786 + MIT1002_01056 0.85 +0.3
1,167,786 + MIT1002_01056 0.85 -0.6
1,167,794 - MIT1002_01056 0.85 +1.1
1,167,795 + MIT1002_01056 0.85 -0.7
1,167,795 + MIT1002_01056 0.85 -0.4
1,167,795 + MIT1002_01056 0.85 -1.7
1,167,795 + MIT1002_01056 0.85 -0.4
1,167,803 - MIT1002_01056 0.86 +1.2
1,167,803 - MIT1002_01056 0.86 +3.0
1,167,868 - +0.1
1,167,911 + -1.0
1,167,919 - -0.4
1,168,057 - +0.3
1,168,057 - -0.2
1,168,089 + MIT1002_01057 0.10 -1.4
1,168,116 - MIT1002_01057 0.17 -0.2
1,168,127 - MIT1002_01057 0.19 -1.5
1,168,149 - MIT1002_01057 0.24 -0.9
1,168,243 + MIT1002_01057 0.46 +1.0
1,168,431 + +0.5
1,168,456 - +0.4
1,168,456 - +1.1
1,168,518 + MIT1002_01058 0.18 -0.3
1,168,518 + MIT1002_01058 0.18 -0.7
1,168,528 - MIT1002_01058 0.21 -0.4
1,168,551 + MIT1002_01058 0.29 +0.3
1,168,569 - MIT1002_01058 0.35 +0.5
1,168,585 + MIT1002_01058 0.40 +0.0
1,168,608 - MIT1002_01058 0.48 +0.5
1,168,613 - MIT1002_01058 0.50 +0.1
1,168,646 - MIT1002_01058 0.61 +2.1
1,168,663 + MIT1002_01058 0.67 -0.3
1,168,663 + MIT1002_01058 0.67 -0.2
1,168,663 + MIT1002_01058 0.67 -0.1
1,168,669 - MIT1002_01058 0.69 +0.8
1,168,669 - MIT1002_01058 0.69 +1.0
1,168,673 + MIT1002_01058 0.70 +0.2
1,168,678 + MIT1002_01058 0.72 -0.5
1,168,678 + MIT1002_01058 0.72 +0.3
1,168,681 - MIT1002_01058 0.73 +0.1
1,168,686 - MIT1002_01058 0.74 +0.6
1,168,743 - -0.1
1,168,795 + -1.6
1,168,806 + -1.1
1,168,806 + -2.3
1,168,806 + -0.5
1,168,806 + -0.2
1,168,806 + -0.5
1,168,814 - -1.0
1,168,815 - +0.4
1,168,887 - +0.2
1,168,887 - -0.7
1,168,895 + -0.4
1,168,911 - -0.2
1,168,945 + +0.3

Or see this region's nucleotide sequence