Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01052

Experiment: monoculture; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 1
1,161,571	-		MIT1002_01051	0.27	+0.0
1,161,575	+		MIT1002_01051	0.28	+0.5
1,161,633	+		MIT1002_01051	0.32	-0.7
1,161,678	+		MIT1002_01051	0.36	+0.4
1,161,680	-		MIT1002_01051	0.36	-1.0
1,161,783	+		MIT1002_01051	0.45	-1.2
1,161,791	-		MIT1002_01051	0.45	-0.7
1,161,803	+		MIT1002_01051	0.46	+0.4
1,161,811	-		MIT1002_01051	0.47	-0.6
1,161,837	+		MIT1002_01051	0.49	-0.6
1,161,837	+		MIT1002_01051	0.49	+0.4
1,161,837	+		MIT1002_01051	0.49	+0.3
1,161,840	-		MIT1002_01051	0.49	+1.1
1,161,845	-		MIT1002_01051	0.50	+0.4
1,161,845	-		MIT1002_01051	0.50	-0.2
1,161,948	+		MIT1002_01051	0.58	+0.5
1,161,989	+		MIT1002_01051	0.62	-0.8
1,162,004	+		MIT1002_01051	0.63	-1.5
1,162,123	-		MIT1002_01051	0.73	-0.1
1,162,210	+		MIT1002_01051	0.80	+0.2
1,162,228	+		MIT1002_01051	0.81	+0.6
1,162,228	+		MIT1002_01051	0.81	-0.5
1,162,278	+		MIT1002_01051	0.86	-0.8
1,162,284	-		MIT1002_01051	0.86	+0.5
1,162,284	-		MIT1002_01051	0.86	+0.1
1,162,530	+				-1.2
1,162,530	+				+0.3
1,162,537	+				+0.4
1,162,545	-				-1.1
1,162,547	+				-0.9
1,162,555	-				-0.6
1,162,555	-				+0.4
1,162,581	+				+0.6
1,162,581	+				+0.3
1,162,589	-				+0.7
1,162,598	+				-0.2
1,162,714	-		MIT1002_01052	0.26	-0.3
1,162,737	+		MIT1002_01052	0.29	-0.7
1,162,737	+		MIT1002_01052	0.29	+0.5
1,162,745	-		MIT1002_01052	0.31	+0.5
1,162,814	+		MIT1002_01052	0.42	-0.5
1,162,835	-		MIT1002_01052	0.45	-1.4
1,162,870	+		MIT1002_01052	0.51	-0.6
1,162,870	+		MIT1002_01052	0.51	-0.7
1,162,878	-		MIT1002_01052	0.52	+0.6
1,162,913	+		MIT1002_01052	0.58	-0.2
1,162,964	-		MIT1002_01052	0.66	-1.9
1,162,986	-		MIT1002_01052	0.70	+0.2
1,162,989	+		MIT1002_01052	0.70	+0.3
1,163,090	+		MIT1002_01052	0.86	+0.4
1,163,090	+		MIT1002_01052	0.86	-0.3
1,163,098	-		MIT1002_01052	0.88	-1.1
1,163,098	-		MIT1002_01052	0.88	+0.3
1,163,124	-				-1.0
1,163,174	+				+0.6
1,163,197	+				-0.7
1,163,235	-				+0.5
1,163,245	+				-2.8
1,163,245	+				-1.4
1,163,250	+				+0.8
1,163,253	-				+0.4
1,163,253	-				-0.0
1,163,278	+				+0.1
1,163,390	-				-0.3
1,163,472	-				+0.1
1,163,483	-				-0.1
1,163,483	-				+1.1
1,163,484	+				+0.2
1,163,505	+				+0.1
1,163,595	+				-0.9
1,163,595	+				+1.1
1,163,595	+				-0.0
1,163,595	+				-0.3
1,163,603	-				+0.4
1,163,603	-				+0.7
1,163,603	-				+0.3
1,163,603	-				-0.0
1,163,603	-				+0.0
1,163,603	-				-0.0
1,163,603	-				+1.3
1,163,629	+				-0.1
1,163,637	-		MIT1002_01053	0.10	-0.5
1,163,670	+		MIT1002_01053	0.14	-0.4
1,163,722	-		MIT1002_01053	0.19	-1.0
1,163,850	-		MIT1002_01053	0.32	+0.3
1,163,852	+		MIT1002_01053	0.32	+2.0
1,163,860	-		MIT1002_01053	0.33	+0.1
1,163,937	-		MIT1002_01053	0.41	+1.0