Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00888 and MIT1002_00889 are separated by 138 nucleotides MIT1002_00889 and MIT1002_00890 are separated by 220 nucleotides MIT1002_00890 and MIT1002_00891 are separated by 320 nucleotides MIT1002_00891 and MIT1002_00892 are separated by 93 nucleotides
MIT1002_00888: MIT1002_00888 - Organic hydroperoxide resistance transcriptional regulator, at 978,544 to 978,987
_00888
MIT1002_00889: MIT1002_00889 - General stress protein 17o, at 979,126 to 979,554
_00889
MIT1002_00890: MIT1002_00890 - Aminopeptidase N, at 979,775 to 981,706
_00890
MIT1002_00891: MIT1002_00891 - peroxiredoxin, at 982,027 to 982,563
_00891
MIT1002_00892: MIT1002_00892 - Transposase IS116/IS110/IS902 family protein, at 982,657 to 983,682
_00892
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 978.788 kb on + strand, within MIT1002_00888 at 978.796 kb on - strand, within MIT1002_00888 at 978.796 kb on - strand, within MIT1002_00888 at 978.804 kb on - strand, within MIT1002_00888 at 978.863 kb on - strand, within MIT1002_00888 at 978.914 kb on + strand, within MIT1002_00888 at 978.934 kb on - strand, within MIT1002_00888 at 978.991 kb on + strand at 978.999 kb on - strand at 978.999 kb on - strand at 978.999 kb on - strand at 979.109 kb on + strand at 979.117 kb on - strand at 979.127 kb on - strand at 979.154 kb on - strand at 979.217 kb on + strand, within MIT1002_00889 at 979.217 kb on + strand, within MIT1002_00889 at 979.225 kb on - strand, within MIT1002_00889 at 979.235 kb on - strand, within MIT1002_00889 at 979.235 kb on - strand, within MIT1002_00889 at 979.328 kb on - strand, within MIT1002_00889 at 979.373 kb on - strand, within MIT1002_00889 at 979.402 kb on + strand, within MIT1002_00889 at 979.452 kb on + strand, within MIT1002_00889 at 979.465 kb on + strand, within MIT1002_00889 at 979.476 kb on + strand, within MIT1002_00889 at 979.545 kb on - strand at 979.598 kb on - strand at 979.637 kb on + strand at 979.637 kb on + strand at 979.640 kb on - strand at 979.645 kb on - strand at 979.653 kb on + strand at 979.661 kb on - strand at 979.698 kb on + strand at 979.709 kb on - strand at 979.835 kb on + strand at 979.843 kb on - strand at 979.843 kb on - strand at 979.905 kb on - strand at 979.911 kb on + strand at 979.962 kb on - strand at 980.017 kb on + strand, within MIT1002_00890 at 980.090 kb on + strand, within MIT1002_00890 at 980.117 kb on + strand, within MIT1002_00890 at 980.158 kb on + strand, within MIT1002_00890 at 980.159 kb on + strand, within MIT1002_00890 at 980.164 kb on + strand, within MIT1002_00890 at 980.164 kb on + strand, within MIT1002_00890 at 980.206 kb on - strand, within MIT1002_00890 at 980.268 kb on + strand, within MIT1002_00890 at 980.277 kb on - strand, within MIT1002_00890 at 980.323 kb on - strand, within MIT1002_00890 at 980.338 kb on - strand, within MIT1002_00890 at 980.382 kb on + strand, within MIT1002_00890 at 980.382 kb on + strand, within MIT1002_00890 at 980.403 kb on - strand, within MIT1002_00890 at 980.488 kb on + strand, within MIT1002_00890 at 980.496 kb on - strand, within MIT1002_00890 at 980.496 kb on - strand, within MIT1002_00890 at 980.515 kb on + strand, within MIT1002_00890 at 980.515 kb on + strand, within MIT1002_00890 at 980.523 kb on - strand, within MIT1002_00890 at 980.523 kb on - strand, within MIT1002_00890 at 980.533 kb on + strand, within MIT1002_00890 at 980.551 kb on + strand, within MIT1002_00890 at 980.554 kb on - strand, within MIT1002_00890 at 980.581 kb on + strand, within MIT1002_00890 at 980.636 kb on + strand, within MIT1002_00890 at 980.643 kb on + strand, within MIT1002_00890 at 980.651 kb on - strand, within MIT1002_00890 at 980.651 kb on - strand, within MIT1002_00890 at 980.652 kb on - strand, within MIT1002_00890 at 980.683 kb on - strand, within MIT1002_00890 at 980.759 kb on + strand, within MIT1002_00890 at 980.781 kb on + strand, within MIT1002_00890 at 980.805 kb on + strand, within MIT1002_00890 at 980.805 kb on + strand, within MIT1002_00890 at 980.852 kb on + strand, within MIT1002_00890 at 980.868 kb on - strand, within MIT1002_00890 at 980.930 kb on + strand, within MIT1002_00890 at 980.945 kb on - strand, within MIT1002_00890 at 981.123 kb on + strand, within MIT1002_00890 at 981.131 kb on - strand, within MIT1002_00890 at 981.276 kb on - strand, within MIT1002_00890 at 981.300 kb on - strand, within MIT1002_00890 at 981.323 kb on - strand, within MIT1002_00890 at 981.349 kb on + strand, within MIT1002_00890 at 981.357 kb on - strand, within MIT1002_00890 at 981.369 kb on + strand, within MIT1002_00890 at 981.369 kb on - strand, within MIT1002_00890 at 981.371 kb on + strand, within MIT1002_00890 at 981.371 kb on + strand, within MIT1002_00890 at 981.371 kb on + strand, within MIT1002_00890 at 981.377 kb on - strand, within MIT1002_00890 at 981.379 kb on - strand, within MIT1002_00890 at 981.379 kb on - strand, within MIT1002_00890 at 981.379 kb on - strand, within MIT1002_00890 at 981.410 kb on + strand, within MIT1002_00890 at 981.410 kb on + strand, within MIT1002_00890 at 981.434 kb on + strand, within MIT1002_00890 at 981.609 kb on + strand at 981.677 kb on + strand at 981.701 kb on + strand at 981.783 kb on - strand at 981.824 kb on + strand at 981.829 kb on - strand at 981.921 kb on + strand at 981.969 kb on - strand at 982.008 kb on - strand at 982.090 kb on + strand, within MIT1002_00891 at 982.218 kb on - strand, within MIT1002_00891 at 982.257 kb on + strand, within MIT1002_00891 at 982.264 kb on + strand, within MIT1002_00891 at 982.267 kb on - strand, within MIT1002_00891 at 982.272 kb on - strand, within MIT1002_00891 at 982.282 kb on + strand, within MIT1002_00891 at 982.366 kb on - strand, within MIT1002_00891 at 982.488 kb on - strand, within MIT1002_00891 at 982.509 kb on - strand, within MIT1002_00891 at 982.533 kb on - strand at 982.550 kb on + strand at 982.566 kb on - strand at 982.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 978,788 + MIT1002_00888 0.55 +2.2 978,796 - MIT1002_00888 0.57 +0.7 978,796 - MIT1002_00888 0.57 -0.9 978,804 - MIT1002_00888 0.59 +0.4 978,863 - MIT1002_00888 0.72 +0.9 978,914 + MIT1002_00888 0.83 -0.4 978,934 - MIT1002_00888 0.88 -2.0 978,991 + +0.6 978,999 - -1.6 978,999 - -0.3 978,999 - -0.2 979,109 + +0.9 979,117 - +0.0 979,127 - -0.9 979,154 - -0.3 979,217 + MIT1002_00889 0.21 -0.0 979,217 + MIT1002_00889 0.21 -0.5 979,225 - MIT1002_00889 0.23 +0.4 979,235 - MIT1002_00889 0.25 -2.0 979,235 - MIT1002_00889 0.25 -0.4 979,328 - MIT1002_00889 0.47 -1.4 979,373 - MIT1002_00889 0.58 -0.3 979,402 + MIT1002_00889 0.64 +0.5 979,452 + MIT1002_00889 0.76 -0.1 979,465 + MIT1002_00889 0.79 +1.0 979,476 + MIT1002_00889 0.82 -0.3 979,545 - +0.5 979,598 - -0.4 979,637 + -2.0 979,637 + +0.2 979,640 - -0.5 979,645 - +0.8 979,653 + -0.5 979,661 - -0.1 979,698 + -0.4 979,709 - +0.8 979,835 + -0.4 979,843 - +1.6 979,843 - +1.4 979,905 - +0.5 979,911 + -1.3 979,962 - -0.5 980,017 + MIT1002_00890 0.13 -0.4 980,090 + MIT1002_00890 0.16 +0.8 980,117 + MIT1002_00890 0.18 -0.6 980,158 + MIT1002_00890 0.20 +0.6 980,159 + MIT1002_00890 0.20 +0.4 980,164 + MIT1002_00890 0.20 +0.8 980,164 + MIT1002_00890 0.20 -0.1 980,206 - MIT1002_00890 0.22 +0.3 980,268 + MIT1002_00890 0.26 -0.7 980,277 - MIT1002_00890 0.26 +1.0 980,323 - MIT1002_00890 0.28 +0.9 980,338 - MIT1002_00890 0.29 -0.1 980,382 + MIT1002_00890 0.31 -0.7 980,382 + MIT1002_00890 0.31 +0.9 980,403 - MIT1002_00890 0.33 -0.2 980,488 + MIT1002_00890 0.37 +1.3 980,496 - MIT1002_00890 0.37 -1.9 980,496 - MIT1002_00890 0.37 +0.9 980,515 + MIT1002_00890 0.38 +0.5 980,515 + MIT1002_00890 0.38 +0.4 980,523 - MIT1002_00890 0.39 +1.9 980,523 - MIT1002_00890 0.39 -0.3 980,533 + MIT1002_00890 0.39 +0.1 980,551 + MIT1002_00890 0.40 +1.9 980,554 - MIT1002_00890 0.40 -0.2 980,581 + MIT1002_00890 0.42 -1.4 980,636 + MIT1002_00890 0.45 +1.0 980,643 + MIT1002_00890 0.45 +0.1 980,651 - MIT1002_00890 0.45 -0.4 980,651 - MIT1002_00890 0.45 -1.0 980,652 - MIT1002_00890 0.45 +0.1 980,683 - MIT1002_00890 0.47 -0.9 980,759 + MIT1002_00890 0.51 +0.3 980,781 + MIT1002_00890 0.52 +0.8 980,805 + MIT1002_00890 0.53 +1.2 980,805 + MIT1002_00890 0.53 +0.2 980,852 + MIT1002_00890 0.56 +2.2 980,868 - MIT1002_00890 0.57 +0.4 980,930 + MIT1002_00890 0.60 +1.7 980,945 - MIT1002_00890 0.61 -1.1 981,123 + MIT1002_00890 0.70 -0.4 981,131 - MIT1002_00890 0.70 +0.2 981,276 - MIT1002_00890 0.78 -1.2 981,300 - MIT1002_00890 0.79 -0.1 981,323 - MIT1002_00890 0.80 -1.0 981,349 + MIT1002_00890 0.81 -0.6 981,357 - MIT1002_00890 0.82 -0.2 981,369 + MIT1002_00890 0.83 -0.9 981,369 - MIT1002_00890 0.83 +1.1 981,371 + MIT1002_00890 0.83 +1.2 981,371 + MIT1002_00890 0.83 -0.7 981,371 + MIT1002_00890 0.83 +0.2 981,377 - MIT1002_00890 0.83 -1.8 981,379 - MIT1002_00890 0.83 +0.0 981,379 - MIT1002_00890 0.83 +0.5 981,379 - MIT1002_00890 0.83 +0.9 981,410 + MIT1002_00890 0.85 +0.2 981,410 + MIT1002_00890 0.85 +0.1 981,434 + MIT1002_00890 0.86 -0.2 981,609 + +0.2 981,677 + -1.1 981,701 + +1.4 981,783 - +1.7 981,824 + +0.3 981,829 - -0.5 981,921 + -2.0 981,969 - -0.6 982,008 - -1.3 982,090 + MIT1002_00891 0.12 +0.0 982,218 - MIT1002_00891 0.36 -0.2 982,257 + MIT1002_00891 0.43 -1.2 982,264 + MIT1002_00891 0.44 +0.7 982,267 - MIT1002_00891 0.45 +0.3 982,272 - MIT1002_00891 0.46 +0.1 982,282 + MIT1002_00891 0.47 +1.3 982,366 - MIT1002_00891 0.63 -0.7 982,488 - MIT1002_00891 0.86 +0.7 982,509 - MIT1002_00891 0.90 +1.1 982,533 - -1.9 982,550 + +0.7 982,566 - +2.4 982,588 - +0.2
Or see this region's nucleotide sequence