Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00844 and MIT1002_00845 are separated by 330 nucleotides MIT1002_00845 and MIT1002_00846 are separated by 211 nucleotides MIT1002_00846 and MIT1002_00847 are separated by 42 nucleotides
MIT1002_00844: MIT1002_00844 - AFG1-like ATPase, at 924,966 to 926,063
_00844
MIT1002_00845: MIT1002_00845 - putative transcriptional regulatory protein YeeN, at 926,394 to 927,116
_00845
MIT1002_00846: MIT1002_00846 - Major NAD(P)H-flavin oxidoreductase, at 927,328 to 927,984
_00846
MIT1002_00847: MIT1002_00847 - hypothetical protein, at 928,027 to 928,302
_00847
Position (kb) 926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 925.446 kb on - strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.516 kb on - strand, within MIT1002_00844 at 925.688 kb on - strand, within MIT1002_00844 at 925.697 kb on - strand, within MIT1002_00844 at 925.809 kb on - strand, within MIT1002_00844 at 925.814 kb on - strand, within MIT1002_00844 at 925.870 kb on - strand, within MIT1002_00844 at 925.929 kb on - strand, within MIT1002_00844 at 925.966 kb on + strand at 925.979 kb on + strand at 925.979 kb on + strand at 926.002 kb on + strand at 926.002 kb on + strand at 926.010 kb on - strand at 926.010 kb on - strand at 926.121 kb on + strand at 926.122 kb on - strand at 926.223 kb on + strand at 926.296 kb on + strand at 926.339 kb on - strand at 926.437 kb on - strand at 926.619 kb on + strand, within MIT1002_00845 at 926.627 kb on + strand, within MIT1002_00845 at 926.657 kb on - strand, within MIT1002_00845 at 926.658 kb on - strand, within MIT1002_00845 at 926.713 kb on + strand, within MIT1002_00845 at 926.744 kb on - strand, within MIT1002_00845 at 926.773 kb on - strand, within MIT1002_00845 at 926.896 kb on - strand, within MIT1002_00845 at 926.930 kb on + strand, within MIT1002_00845 at 926.930 kb on + strand, within MIT1002_00845 at 926.945 kb on + strand, within MIT1002_00845 at 926.953 kb on - strand, within MIT1002_00845 at 926.953 kb on - strand, within MIT1002_00845 at 927.078 kb on - strand at 927.092 kb on + strand at 927.158 kb on - strand at 927.360 kb on + strand at 927.381 kb on - strand at 927.429 kb on + strand, within MIT1002_00846 at 927.466 kb on - strand, within MIT1002_00846 at 927.466 kb on - strand, within MIT1002_00846 at 927.484 kb on + strand, within MIT1002_00846 at 927.515 kb on - strand, within MIT1002_00846 at 927.515 kb on - strand, within MIT1002_00846 at 927.528 kb on - strand, within MIT1002_00846 at 927.557 kb on - strand, within MIT1002_00846 at 927.678 kb on + strand, within MIT1002_00846 at 927.678 kb on + strand, within MIT1002_00846 at 927.713 kb on - strand, within MIT1002_00846 at 927.744 kb on - strand, within MIT1002_00846 at 927.749 kb on - strand, within MIT1002_00846 at 927.753 kb on + strand, within MIT1002_00846 at 927.763 kb on + strand, within MIT1002_00846 at 927.801 kb on - strand, within MIT1002_00846 at 927.801 kb on - strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.860 kb on - strand, within MIT1002_00846 at 927.862 kb on + strand, within MIT1002_00846 at 927.906 kb on + strand, within MIT1002_00846 at 927.979 kb on + strand at 928.017 kb on - strand at 928.020 kb on + strand at 928.088 kb on + strand, within MIT1002_00847
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 925,446 - MIT1002_00844 0.44 -1.3 925,508 + MIT1002_00844 0.49 -1.6 925,508 + MIT1002_00844 0.49 +0.9 925,508 + MIT1002_00844 0.49 -0.9 925,508 + MIT1002_00844 0.49 -0.4 925,508 + MIT1002_00844 0.49 -0.6 925,516 - MIT1002_00844 0.50 -1.9 925,688 - MIT1002_00844 0.66 -1.6 925,697 - MIT1002_00844 0.67 -0.6 925,809 - MIT1002_00844 0.77 -1.1 925,814 - MIT1002_00844 0.77 -2.7 925,870 - MIT1002_00844 0.82 -2.3 925,929 - MIT1002_00844 0.88 -1.0 925,966 + -1.5 925,979 + -1.4 925,979 + -2.7 926,002 + -0.8 926,002 + -0.7 926,010 - -0.3 926,010 - -1.3 926,121 + -0.7 926,122 - +0.8 926,223 + -1.0 926,296 + +0.4 926,339 - +0.8 926,437 - -1.6 926,619 + MIT1002_00845 0.31 -0.9 926,627 + MIT1002_00845 0.32 -2.3 926,657 - MIT1002_00845 0.36 -1.1 926,658 - MIT1002_00845 0.37 -0.7 926,713 + MIT1002_00845 0.44 -0.1 926,744 - MIT1002_00845 0.48 +0.5 926,773 - MIT1002_00845 0.52 -3.4 926,896 - MIT1002_00845 0.69 -1.1 926,930 + MIT1002_00845 0.74 -2.4 926,930 + MIT1002_00845 0.74 -1.4 926,945 + MIT1002_00845 0.76 -3.9 926,953 - MIT1002_00845 0.77 -0.9 926,953 - MIT1002_00845 0.77 -1.7 927,078 - -0.7 927,092 + +0.9 927,158 - -0.3 927,360 + -0.7 927,381 - +0.8 927,429 + MIT1002_00846 0.15 +0.4 927,466 - MIT1002_00846 0.21 -0.3 927,466 - MIT1002_00846 0.21 +1.7 927,484 + MIT1002_00846 0.24 +0.7 927,515 - MIT1002_00846 0.28 +0.5 927,515 - MIT1002_00846 0.28 -0.8 927,528 - MIT1002_00846 0.30 +0.7 927,557 - MIT1002_00846 0.35 +0.5 927,678 + MIT1002_00846 0.53 +0.7 927,678 + MIT1002_00846 0.53 +0.1 927,713 - MIT1002_00846 0.59 -0.1 927,744 - MIT1002_00846 0.63 -0.2 927,749 - MIT1002_00846 0.64 +1.4 927,753 + MIT1002_00846 0.65 +0.6 927,763 + MIT1002_00846 0.66 +1.3 927,801 - MIT1002_00846 0.72 +0.2 927,801 - MIT1002_00846 0.72 +0.6 927,852 + MIT1002_00846 0.80 +0.5 927,852 + MIT1002_00846 0.80 -0.3 927,852 + MIT1002_00846 0.80 -1.4 927,852 + MIT1002_00846 0.80 +0.8 927,860 - MIT1002_00846 0.81 +0.6 927,862 + MIT1002_00846 0.81 -0.2 927,906 + MIT1002_00846 0.88 +0.1 927,979 + +1.1 928,017 - +0.4 928,020 + -0.5 928,088 + MIT1002_00847 0.22 -0.3
Or see this region's nucleotide sequence