Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00779 and MIT1002_00780 are separated by 7 nucleotides MIT1002_00780 and MIT1002_00781 are separated by 7 nucleotides MIT1002_00781 and MIT1002_00782 overlap by 4 nucleotides MIT1002_00782 and MIT1002_00783 are separated by 13 nucleotides
MIT1002_00779: MIT1002_00779 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 863,176 to 864,003
_00779
MIT1002_00780: MIT1002_00780 - CO2+/MG2+ efflux protein ApaG, at 864,011 to 864,385
_00780
MIT1002_00781: MIT1002_00781 - Ribosomal RNA small subunit methyltransferase A, at 864,393 to 865,220
_00781
MIT1002_00782: MIT1002_00782 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 865,217 to 866,203
_00782
MIT1002_00783: MIT1002_00783 - Peptidyl-prolyl cis-trans isomerase SurA, at 866,217 to 867,500
_00783
Position (kb) 864
865
866 Strain fitness (log2 ratio) -2
-1
0
1 at 863.455 kb on + strand, within MIT1002_00779 at 863.469 kb on + strand, within MIT1002_00779 at 863.601 kb on - strand, within MIT1002_00779 at 863.649 kb on - strand, within MIT1002_00779 at 863.685 kb on + strand, within MIT1002_00779 at 863.685 kb on + strand, within MIT1002_00779 at 863.721 kb on - strand, within MIT1002_00779 at 863.728 kb on - strand, within MIT1002_00779 at 863.733 kb on + strand, within MIT1002_00779 at 863.813 kb on + strand, within MIT1002_00779 at 863.813 kb on + strand, within MIT1002_00779 at 863.821 kb on - strand, within MIT1002_00779 at 863.899 kb on - strand, within MIT1002_00779 at 863.940 kb on - strand at 863.975 kb on + strand at 864.077 kb on + strand, within MIT1002_00780 at 864.085 kb on + strand, within MIT1002_00780 at 864.085 kb on - strand, within MIT1002_00780 at 864.122 kb on + strand, within MIT1002_00780 at 864.122 kb on + strand, within MIT1002_00780 at 864.122 kb on + strand, within MIT1002_00780 at 864.130 kb on - strand, within MIT1002_00780 at 864.130 kb on - strand, within MIT1002_00780 at 864.167 kb on + strand, within MIT1002_00780 at 864.182 kb on + strand, within MIT1002_00780 at 864.182 kb on + strand, within MIT1002_00780 at 864.183 kb on + strand, within MIT1002_00780 at 864.262 kb on - strand, within MIT1002_00780 at 864.286 kb on + strand, within MIT1002_00780 at 864.359 kb on - strand at 864.364 kb on + strand at 864.372 kb on - strand at 864.372 kb on - strand at 864.396 kb on + strand at 864.435 kb on - strand at 864.769 kb on + strand, within MIT1002_00781 at 864.854 kb on - strand, within MIT1002_00781 at 864.944 kb on - strand, within MIT1002_00781 at 865.015 kb on + strand, within MIT1002_00781 at 865.075 kb on - strand, within MIT1002_00781
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 863,455 + MIT1002_00779 0.34 -0.8 863,469 + MIT1002_00779 0.35 +0.6 863,601 - MIT1002_00779 0.51 +1.2 863,649 - MIT1002_00779 0.57 +0.1 863,685 + MIT1002_00779 0.61 -2.1 863,685 + MIT1002_00779 0.61 -1.3 863,721 - MIT1002_00779 0.66 -1.5 863,728 - MIT1002_00779 0.67 -0.5 863,733 + MIT1002_00779 0.67 -0.1 863,813 + MIT1002_00779 0.77 +0.9 863,813 + MIT1002_00779 0.77 +0.0 863,821 - MIT1002_00779 0.78 -0.7 863,899 - MIT1002_00779 0.87 -0.2 863,940 - -0.4 863,975 + +1.5 864,077 + MIT1002_00780 0.18 -0.6 864,085 + MIT1002_00780 0.20 -1.0 864,085 - MIT1002_00780 0.20 -2.4 864,122 + MIT1002_00780 0.30 +1.2 864,122 + MIT1002_00780 0.30 +1.1 864,122 + MIT1002_00780 0.30 +0.6 864,130 - MIT1002_00780 0.32 -0.3 864,130 - MIT1002_00780 0.32 +0.4 864,167 + MIT1002_00780 0.42 -0.5 864,182 + MIT1002_00780 0.46 -0.1 864,182 + MIT1002_00780 0.46 -0.1 864,183 + MIT1002_00780 0.46 +1.2 864,262 - MIT1002_00780 0.67 +0.0 864,286 + MIT1002_00780 0.73 +1.4 864,359 - -1.7 864,364 + +0.0 864,372 - -0.4 864,372 - +0.2 864,396 + -0.3 864,435 - +0.5 864,769 + MIT1002_00781 0.45 -2.6 864,854 - MIT1002_00781 0.56 -0.1 864,944 - MIT1002_00781 0.67 -2.2 865,015 + MIT1002_00781 0.75 -1.4 865,075 - MIT1002_00781 0.82 -0.7
Or see this region's nucleotide sequence