Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00760 and MIT1002_00761 are separated by 3 nucleotides MIT1002_00761 and MIT1002_00762 are separated by 6 nucleotides MIT1002_00762 and MIT1002_00763 are separated by 57 nucleotides
MIT1002_00760: MIT1002_00760 - Biopolymer transport protein ExbD, at 836,114 to 836,521
_00760
MIT1002_00761: MIT1002_00761 - transport protein TonB, at 836,525 to 837,133
_00761
MIT1002_00762: MIT1002_00762 - Anaphase-promoting complex, cyclosome, subunit 3, at 837,140 to 838,498
_00762
MIT1002_00763: MIT1002_00763 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 838,556 to 839,656
_00763
Position (kb) 837
838
839 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 836.249 kb on - strand, within MIT1002_00760 at 836.256 kb on + strand, within MIT1002_00760 at 836.363 kb on + strand, within MIT1002_00760 at 836.382 kb on - strand, within MIT1002_00760 at 836.404 kb on + strand, within MIT1002_00760 at 836.515 kb on - strand at 836.576 kb on - strand at 836.632 kb on + strand, within MIT1002_00761 at 836.661 kb on + strand, within MIT1002_00761 at 836.669 kb on - strand, within MIT1002_00761 at 836.726 kb on - strand, within MIT1002_00761 at 836.749 kb on + strand, within MIT1002_00761 at 836.869 kb on - strand, within MIT1002_00761 at 836.930 kb on - strand, within MIT1002_00761 at 836.930 kb on - strand, within MIT1002_00761 at 837.113 kb on - strand at 837.174 kb on - strand at 837.195 kb on + strand at 837.201 kb on + strand at 837.249 kb on + strand at 837.270 kb on - strand at 837.274 kb on - strand at 837.306 kb on + strand, within MIT1002_00762 at 837.343 kb on - strand, within MIT1002_00762 at 837.352 kb on + strand, within MIT1002_00762 at 837.352 kb on + strand, within MIT1002_00762 at 837.418 kb on + strand, within MIT1002_00762 at 837.485 kb on + strand, within MIT1002_00762 at 837.485 kb on + strand, within MIT1002_00762 at 837.503 kb on + strand, within MIT1002_00762 at 837.503 kb on + strand, within MIT1002_00762 at 837.517 kb on + strand, within MIT1002_00762 at 837.525 kb on - strand, within MIT1002_00762 at 837.538 kb on + strand, within MIT1002_00762 at 837.546 kb on - strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.586 kb on + strand, within MIT1002_00762 at 837.591 kb on + strand, within MIT1002_00762 at 837.591 kb on + strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.594 kb on - strand, within MIT1002_00762 at 837.599 kb on - strand, within MIT1002_00762 at 837.599 kb on - strand, within MIT1002_00762 at 837.599 kb on - strand, within MIT1002_00762 at 837.601 kb on + strand, within MIT1002_00762 at 837.647 kb on - strand, within MIT1002_00762 at 837.653 kb on - strand, within MIT1002_00762 at 837.695 kb on - strand, within MIT1002_00762 at 837.770 kb on + strand, within MIT1002_00762 at 837.779 kb on - strand, within MIT1002_00762 at 837.834 kb on + strand, within MIT1002_00762 at 837.849 kb on - strand, within MIT1002_00762 at 837.849 kb on - strand, within MIT1002_00762 at 837.850 kb on - strand, within MIT1002_00762 at 837.856 kb on + strand, within MIT1002_00762 at 837.856 kb on + strand, within MIT1002_00762 at 837.873 kb on + strand, within MIT1002_00762 at 837.897 kb on - strand, within MIT1002_00762 at 837.908 kb on + strand, within MIT1002_00762 at 837.928 kb on - strand, within MIT1002_00762 at 837.979 kb on + strand, within MIT1002_00762 at 838.000 kb on + strand, within MIT1002_00762 at 838.000 kb on + strand, within MIT1002_00762 at 838.000 kb on + strand, within MIT1002_00762 at 838.003 kb on - strand, within MIT1002_00762 at 838.006 kb on - strand, within MIT1002_00762 at 838.008 kb on - strand, within MIT1002_00762 at 838.023 kb on - strand, within MIT1002_00762 at 838.054 kb on - strand, within MIT1002_00762 at 838.126 kb on - strand, within MIT1002_00762 at 838.126 kb on - strand, within MIT1002_00762 at 838.131 kb on - strand, within MIT1002_00762 at 838.150 kb on - strand, within MIT1002_00762 at 838.150 kb on - strand, within MIT1002_00762 at 838.176 kb on + strand, within MIT1002_00762 at 838.184 kb on - strand, within MIT1002_00762 at 838.304 kb on + strand, within MIT1002_00762 at 838.318 kb on + strand, within MIT1002_00762 at 838.358 kb on - strand, within MIT1002_00762 at 838.362 kb on + strand, within MIT1002_00762 at 838.428 kb on + strand at 838.428 kb on + strand at 838.436 kb on - strand at 838.455 kb on - strand at 838.502 kb on - strand at 838.597 kb on - strand at 838.617 kb on + strand at 838.625 kb on - strand at 838.625 kb on - strand at 838.705 kb on + strand, within MIT1002_00763 at 838.705 kb on + strand, within MIT1002_00763 at 838.707 kb on + strand, within MIT1002_00763 at 838.713 kb on - strand, within MIT1002_00763 at 838.713 kb on - strand, within MIT1002_00763 at 838.713 kb on - strand, within MIT1002_00763 at 838.838 kb on + strand, within MIT1002_00763 at 838.883 kb on + strand, within MIT1002_00763 at 838.891 kb on - strand, within MIT1002_00763 at 838.936 kb on + strand, within MIT1002_00763 at 838.958 kb on - strand, within MIT1002_00763 at 838.980 kb on - strand, within MIT1002_00763 at 838.983 kb on + strand, within MIT1002_00763 at 839.056 kb on - strand, within MIT1002_00763 at 839.056 kb on - strand, within MIT1002_00763 at 839.088 kb on + strand, within MIT1002_00763 at 839.096 kb on - strand, within MIT1002_00763 at 839.096 kb on - strand, within MIT1002_00763 at 839.102 kb on - strand, within MIT1002_00763 at 839.159 kb on - strand, within MIT1002_00763 at 839.243 kb on + strand, within MIT1002_00763 at 839.243 kb on - strand, within MIT1002_00763 at 839.251 kb on - strand, within MIT1002_00763 at 839.251 kb on - strand, within MIT1002_00763 at 839.299 kb on + strand, within MIT1002_00763 at 839.299 kb on + strand, within MIT1002_00763 at 839.309 kb on + strand, within MIT1002_00763 at 839.345 kb on - strand, within MIT1002_00763 at 839.379 kb on - strand, within MIT1002_00763 at 839.386 kb on - strand, within MIT1002_00763 at 839.386 kb on - strand, within MIT1002_00763 at 839.386 kb on - strand, within MIT1002_00763 at 839.412 kb on - strand, within MIT1002_00763 at 839.412 kb on - strand, within MIT1002_00763 at 839.423 kb on - strand, within MIT1002_00763 at 839.446 kb on + strand, within MIT1002_00763 at 839.446 kb on + strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763 at 839.454 kb on - strand, within MIT1002_00763
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 836,249 - MIT1002_00760 0.33 -3.8 836,256 + MIT1002_00760 0.35 -4.9 836,363 + MIT1002_00760 0.61 -0.9 836,382 - MIT1002_00760 0.66 -2.7 836,404 + MIT1002_00760 0.71 -2.5 836,515 - -4.5 836,576 - -2.2 836,632 + MIT1002_00761 0.18 -3.0 836,661 + MIT1002_00761 0.22 -2.4 836,669 - MIT1002_00761 0.24 -3.4 836,726 - MIT1002_00761 0.33 -1.9 836,749 + MIT1002_00761 0.37 -1.4 836,869 - MIT1002_00761 0.56 -3.0 836,930 - MIT1002_00761 0.67 -2.1 836,930 - MIT1002_00761 0.67 -2.0 837,113 - -3.0 837,174 - -0.1 837,195 + -2.4 837,201 + -1.8 837,249 + -0.4 837,270 - -1.7 837,274 - -1.5 837,306 + MIT1002_00762 0.12 -1.8 837,343 - MIT1002_00762 0.15 -4.8 837,352 + MIT1002_00762 0.16 -3.7 837,352 + MIT1002_00762 0.16 -2.5 837,418 + MIT1002_00762 0.20 -4.5 837,485 + MIT1002_00762 0.25 -3.3 837,485 + MIT1002_00762 0.25 -1.1 837,503 + MIT1002_00762 0.27 -0.1 837,503 + MIT1002_00762 0.27 -2.7 837,517 + MIT1002_00762 0.28 -0.8 837,525 - MIT1002_00762 0.28 -2.1 837,538 + MIT1002_00762 0.29 -2.6 837,546 - MIT1002_00762 0.30 -1.2 837,586 + MIT1002_00762 0.33 -1.2 837,586 + MIT1002_00762 0.33 -2.4 837,586 + MIT1002_00762 0.33 -1.3 837,586 + MIT1002_00762 0.33 -0.4 837,591 + MIT1002_00762 0.33 -1.8 837,591 + MIT1002_00762 0.33 -2.9 837,594 - MIT1002_00762 0.33 -1.1 837,594 - MIT1002_00762 0.33 -3.6 837,594 - MIT1002_00762 0.33 -2.3 837,594 - MIT1002_00762 0.33 -1.7 837,594 - MIT1002_00762 0.33 -2.2 837,599 - MIT1002_00762 0.34 -1.8 837,599 - MIT1002_00762 0.34 -2.0 837,599 - MIT1002_00762 0.34 -2.8 837,601 + MIT1002_00762 0.34 -1.7 837,647 - MIT1002_00762 0.37 -2.6 837,653 - MIT1002_00762 0.38 -2.5 837,695 - MIT1002_00762 0.41 -3.5 837,770 + MIT1002_00762 0.46 -2.6 837,779 - MIT1002_00762 0.47 -1.7 837,834 + MIT1002_00762 0.51 -3.0 837,849 - MIT1002_00762 0.52 -3.2 837,849 - MIT1002_00762 0.52 -2.8 837,850 - MIT1002_00762 0.52 -0.7 837,856 + MIT1002_00762 0.53 -2.5 837,856 + MIT1002_00762 0.53 -2.7 837,873 + MIT1002_00762 0.54 -3.1 837,897 - MIT1002_00762 0.56 -3.8 837,908 + MIT1002_00762 0.57 -1.8 837,928 - MIT1002_00762 0.58 -0.8 837,979 + MIT1002_00762 0.62 -1.4 838,000 + MIT1002_00762 0.63 -1.8 838,000 + MIT1002_00762 0.63 -2.3 838,000 + MIT1002_00762 0.63 -1.4 838,003 - MIT1002_00762 0.64 -2.5 838,006 - MIT1002_00762 0.64 -0.9 838,008 - MIT1002_00762 0.64 -0.4 838,023 - MIT1002_00762 0.65 -2.2 838,054 - MIT1002_00762 0.67 -0.1 838,126 - MIT1002_00762 0.73 -1.2 838,126 - MIT1002_00762 0.73 -0.9 838,131 - MIT1002_00762 0.73 -2.7 838,150 - MIT1002_00762 0.74 -1.4 838,150 - MIT1002_00762 0.74 -3.1 838,176 + MIT1002_00762 0.76 -1.1 838,184 - MIT1002_00762 0.77 -0.2 838,304 + MIT1002_00762 0.86 -3.0 838,318 + MIT1002_00762 0.87 -1.8 838,358 - MIT1002_00762 0.90 -1.5 838,362 + MIT1002_00762 0.90 -4.3 838,428 + -0.8 838,428 + +0.6 838,436 - +0.9 838,455 - -1.6 838,502 - -2.7 838,597 - +0.7 838,617 + -1.5 838,625 - +0.1 838,625 - +0.3 838,705 + MIT1002_00763 0.14 +0.3 838,705 + MIT1002_00763 0.14 +0.2 838,707 + MIT1002_00763 0.14 +0.7 838,713 - MIT1002_00763 0.14 -1.0 838,713 - MIT1002_00763 0.14 +0.4 838,713 - MIT1002_00763 0.14 +0.0 838,838 + MIT1002_00763 0.26 -0.4 838,883 + MIT1002_00763 0.30 +0.2 838,891 - MIT1002_00763 0.30 +0.6 838,936 + MIT1002_00763 0.35 +0.4 838,958 - MIT1002_00763 0.37 +0.9 838,980 - MIT1002_00763 0.39 -0.6 838,983 + MIT1002_00763 0.39 -0.1 839,056 - MIT1002_00763 0.45 -0.4 839,056 - MIT1002_00763 0.45 +0.0 839,088 + MIT1002_00763 0.48 -0.1 839,096 - MIT1002_00763 0.49 -0.3 839,096 - MIT1002_00763 0.49 +2.5 839,102 - MIT1002_00763 0.50 +0.6 839,159 - MIT1002_00763 0.55 +0.2 839,243 + MIT1002_00763 0.62 -1.2 839,243 - MIT1002_00763 0.62 -2.2 839,251 - MIT1002_00763 0.63 +0.4 839,251 - MIT1002_00763 0.63 -0.2 839,299 + MIT1002_00763 0.67 -0.1 839,299 + MIT1002_00763 0.67 +0.3 839,309 + MIT1002_00763 0.68 +0.8 839,345 - MIT1002_00763 0.72 +0.3 839,379 - MIT1002_00763 0.75 +1.7 839,386 - MIT1002_00763 0.75 +0.4 839,386 - MIT1002_00763 0.75 -0.6 839,386 - MIT1002_00763 0.75 +1.3 839,412 - MIT1002_00763 0.78 -0.1 839,412 - MIT1002_00763 0.78 +0.2 839,423 - MIT1002_00763 0.79 -0.1 839,446 + MIT1002_00763 0.81 -0.8 839,446 + MIT1002_00763 0.81 +0.2 839,454 - MIT1002_00763 0.82 -1.0 839,454 - MIT1002_00763 0.82 +0.1 839,454 - MIT1002_00763 0.82 +0.3 839,454 - MIT1002_00763 0.82 -0.2 839,454 - MIT1002_00763 0.82 +1.1
Or see this region's nucleotide sequence