Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00761

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00758 and MIT1002_00759 are separated by 2 nucleotidesMIT1002_00759 and MIT1002_00760 are separated by 32 nucleotidesMIT1002_00760 and MIT1002_00761 are separated by 3 nucleotidesMIT1002_00761 and MIT1002_00762 are separated by 6 nucleotides MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560 _00758 MIT1002_00759: MIT1002_00759 - protein TolQ, at 835,563 to 836,081 _00759 MIT1002_00760: MIT1002_00760 - Biopolymer transport protein ExbD, at 836,114 to 836,521 _00760 MIT1002_00761: MIT1002_00761 - transport protein TonB, at 836,525 to 837,133 _00761 MIT1002_00762: MIT1002_00762 - Anaphase-promoting complex, cyclosome, subunit 3, at 837,140 to 838,498 _00762 Position (kb) 836 837 838Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 835.555 kb on + strandat 835.562 kb on - strandat 835.614 kb on + strandat 835.630 kb on - strand, within MIT1002_00759at 835.659 kb on + strand, within MIT1002_00759at 835.734 kb on - strand, within MIT1002_00759at 835.865 kb on - strand, within MIT1002_00759at 835.922 kb on - strand, within MIT1002_00759at 835.928 kb on - strand, within MIT1002_00759at 835.937 kb on + strand, within MIT1002_00759at 836.057 kb on - strandat 836.057 kb on - strandat 836.084 kb on - strandat 836.092 kb on + strandat 836.100 kb on - strandat 836.249 kb on - strand, within MIT1002_00760at 836.256 kb on + strand, within MIT1002_00760at 836.363 kb on + strand, within MIT1002_00760at 836.382 kb on - strand, within MIT1002_00760at 836.404 kb on + strand, within MIT1002_00760at 836.515 kb on - strandat 836.576 kb on - strandat 836.632 kb on + strand, within MIT1002_00761at 836.661 kb on + strand, within MIT1002_00761at 836.669 kb on - strand, within MIT1002_00761at 836.726 kb on - strand, within MIT1002_00761at 836.749 kb on + strand, within MIT1002_00761at 836.869 kb on - strand, within MIT1002_00761at 836.930 kb on - strand, within MIT1002_00761at 836.930 kb on - strand, within MIT1002_00761at 837.113 kb on - strandat 837.174 kb on - strandat 837.195 kb on + strandat 837.201 kb on + strandat 837.249 kb on + strandat 837.270 kb on - strandat 837.274 kb on - strandat 837.306 kb on + strand, within MIT1002_00762at 837.343 kb on - strand, within MIT1002_00762at 837.352 kb on + strand, within MIT1002_00762at 837.352 kb on + strand, within MIT1002_00762at 837.418 kb on + strand, within MIT1002_00762at 837.485 kb on + strand, within MIT1002_00762at 837.485 kb on + strand, within MIT1002_00762at 837.503 kb on + strand, within MIT1002_00762at 837.503 kb on + strand, within MIT1002_00762at 837.517 kb on + strand, within MIT1002_00762at 837.525 kb on - strand, within MIT1002_00762at 837.538 kb on + strand, within MIT1002_00762at 837.546 kb on - strand, within MIT1002_00762at 837.586 kb on + strand, within MIT1002_00762at 837.586 kb on + strand, within MIT1002_00762at 837.586 kb on + strand, within MIT1002_00762at 837.586 kb on + strand, within MIT1002_00762at 837.591 kb on + strand, within MIT1002_00762at 837.591 kb on + strand, within MIT1002_00762at 837.594 kb on - strand, within MIT1002_00762at 837.594 kb on - strand, within MIT1002_00762at 837.594 kb on - strand, within MIT1002_00762at 837.594 kb on - strand, within MIT1002_00762at 837.594 kb on - strand, within MIT1002_00762at 837.599 kb on - strand, within MIT1002_00762at 837.599 kb on - strand, within MIT1002_00762at 837.599 kb on - strand, within MIT1002_00762at 837.601 kb on + strand, within MIT1002_00762at 837.647 kb on - strand, within MIT1002_00762at 837.653 kb on - strand, within MIT1002_00762at 837.695 kb on - strand, within MIT1002_00762at 837.770 kb on + strand, within MIT1002_00762at 837.779 kb on - strand, within MIT1002_00762at 837.834 kb on + strand, within MIT1002_00762at 837.849 kb on - strand, within MIT1002_00762at 837.849 kb on - strand, within MIT1002_00762at 837.850 kb on - strand, within MIT1002_00762at 837.856 kb on + strand, within MIT1002_00762at 837.856 kb on + strand, within MIT1002_00762at 837.873 kb on + strand, within MIT1002_00762at 837.897 kb on - strand, within MIT1002_00762at 837.908 kb on + strand, within MIT1002_00762at 837.928 kb on - strand, within MIT1002_00762at 837.979 kb on + strand, within MIT1002_00762at 838.000 kb on + strand, within MIT1002_00762at 838.000 kb on + strand, within MIT1002_00762at 838.000 kb on + strand, within MIT1002_00762at 838.003 kb on - strand, within MIT1002_00762at 838.006 kb on - strand, within MIT1002_00762at 838.008 kb on - strand, within MIT1002_00762at 838.023 kb on - strand, within MIT1002_00762at 838.054 kb on - strand, within MIT1002_00762at 838.126 kb on - strand, within MIT1002_00762at 838.126 kb on - strand, within MIT1002_00762at 838.131 kb on - strand, within MIT1002_00762

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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835,555 + -3.2
835,562 - -4.2
835,614 + -2.5
835,630 - MIT1002_00759 0.13 -3.1
835,659 + MIT1002_00759 0.18 -2.5
835,734 - MIT1002_00759 0.33 -1.1
835,865 - MIT1002_00759 0.58 -2.3
835,922 - MIT1002_00759 0.69 -3.0
835,928 - MIT1002_00759 0.70 -1.5
835,937 + MIT1002_00759 0.72 -2.8
836,057 - -2.7
836,057 - -1.6
836,084 - -2.5
836,092 + -1.2
836,100 - -3.9
836,249 - MIT1002_00760 0.33 -3.8
836,256 + MIT1002_00760 0.35 -4.9
836,363 + MIT1002_00760 0.61 -0.9
836,382 - MIT1002_00760 0.66 -2.7
836,404 + MIT1002_00760 0.71 -2.5
836,515 - -4.5
836,576 - -2.2
836,632 + MIT1002_00761 0.18 -3.0
836,661 + MIT1002_00761 0.22 -2.4
836,669 - MIT1002_00761 0.24 -3.4
836,726 - MIT1002_00761 0.33 -1.9
836,749 + MIT1002_00761 0.37 -1.4
836,869 - MIT1002_00761 0.56 -3.0
836,930 - MIT1002_00761 0.67 -2.1
836,930 - MIT1002_00761 0.67 -2.0
837,113 - -3.0
837,174 - -0.1
837,195 + -2.4
837,201 + -1.8
837,249 + -0.4
837,270 - -1.7
837,274 - -1.5
837,306 + MIT1002_00762 0.12 -1.8
837,343 - MIT1002_00762 0.15 -4.8
837,352 + MIT1002_00762 0.16 -3.7
837,352 + MIT1002_00762 0.16 -2.5
837,418 + MIT1002_00762 0.20 -4.5
837,485 + MIT1002_00762 0.25 -3.3
837,485 + MIT1002_00762 0.25 -1.1
837,503 + MIT1002_00762 0.27 -0.1
837,503 + MIT1002_00762 0.27 -2.7
837,517 + MIT1002_00762 0.28 -0.8
837,525 - MIT1002_00762 0.28 -2.1
837,538 + MIT1002_00762 0.29 -2.6
837,546 - MIT1002_00762 0.30 -1.2
837,586 + MIT1002_00762 0.33 -1.2
837,586 + MIT1002_00762 0.33 -2.4
837,586 + MIT1002_00762 0.33 -1.3
837,586 + MIT1002_00762 0.33 -0.4
837,591 + MIT1002_00762 0.33 -1.8
837,591 + MIT1002_00762 0.33 -2.9
837,594 - MIT1002_00762 0.33 -1.1
837,594 - MIT1002_00762 0.33 -3.6
837,594 - MIT1002_00762 0.33 -2.3
837,594 - MIT1002_00762 0.33 -1.7
837,594 - MIT1002_00762 0.33 -2.2
837,599 - MIT1002_00762 0.34 -1.8
837,599 - MIT1002_00762 0.34 -2.0
837,599 - MIT1002_00762 0.34 -2.8
837,601 + MIT1002_00762 0.34 -1.7
837,647 - MIT1002_00762 0.37 -2.6
837,653 - MIT1002_00762 0.38 -2.5
837,695 - MIT1002_00762 0.41 -3.5
837,770 + MIT1002_00762 0.46 -2.6
837,779 - MIT1002_00762 0.47 -1.7
837,834 + MIT1002_00762 0.51 -3.0
837,849 - MIT1002_00762 0.52 -3.2
837,849 - MIT1002_00762 0.52 -2.8
837,850 - MIT1002_00762 0.52 -0.7
837,856 + MIT1002_00762 0.53 -2.5
837,856 + MIT1002_00762 0.53 -2.7
837,873 + MIT1002_00762 0.54 -3.1
837,897 - MIT1002_00762 0.56 -3.8
837,908 + MIT1002_00762 0.57 -1.8
837,928 - MIT1002_00762 0.58 -0.8
837,979 + MIT1002_00762 0.62 -1.4
838,000 + MIT1002_00762 0.63 -1.8
838,000 + MIT1002_00762 0.63 -2.3
838,000 + MIT1002_00762 0.63 -1.4
838,003 - MIT1002_00762 0.64 -2.5
838,006 - MIT1002_00762 0.64 -0.9
838,008 - MIT1002_00762 0.64 -0.4
838,023 - MIT1002_00762 0.65 -2.2
838,054 - MIT1002_00762 0.67 -0.1
838,126 - MIT1002_00762 0.73 -1.2
838,126 - MIT1002_00762 0.73 -0.9
838,131 - MIT1002_00762 0.73 -2.7

Or see this region's nucleotide sequence