Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00756

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00755 and MIT1002_00756 are separated by 117 nucleotidesMIT1002_00756 and MIT1002_00757 are separated by 176 nucleotidesMIT1002_00757 and MIT1002_00758 are separated by 13 nucleotides MIT1002_00755: MIT1002_00755 - hypothetical protein, at 827,701 to 830,481 _00755 MIT1002_00756: MIT1002_00756 - TonB-dependent receptor, at 830,599 to 833,247 _00756 MIT1002_00757: MIT1002_00757 - hypothetical protein, at 833,424 to 834,182 _00757 MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560 _00758 Position (kb) 830 831 832 833 834Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 829.619 kb on + strand, within MIT1002_00755at 829.744 kb on - strand, within MIT1002_00755at 829.744 kb on - strand, within MIT1002_00755at 829.766 kb on + strand, within MIT1002_00755at 829.774 kb on - strand, within MIT1002_00755at 829.808 kb on + strand, within MIT1002_00755at 829.808 kb on + strand, within MIT1002_00755at 829.826 kb on - strand, within MIT1002_00755at 829.844 kb on - strand, within MIT1002_00755at 829.890 kb on + strand, within MIT1002_00755at 829.910 kb on + strand, within MIT1002_00755at 829.918 kb on - strand, within MIT1002_00755at 829.941 kb on - strand, within MIT1002_00755at 829.981 kb on + strand, within MIT1002_00755at 829.996 kb on - strand, within MIT1002_00755at 829.998 kb on + strand, within MIT1002_00755at 830.061 kb on + strand, within MIT1002_00755at 830.061 kb on + strand, within MIT1002_00755at 830.061 kb on + strand, within MIT1002_00755at 830.063 kb on + strand, within MIT1002_00755at 830.069 kb on - strand, within MIT1002_00755at 830.077 kb on - strand, within MIT1002_00755at 830.079 kb on - strand, within MIT1002_00755at 830.122 kb on + strand, within MIT1002_00755at 830.130 kb on + strand, within MIT1002_00755at 830.155 kb on + strand, within MIT1002_00755at 830.156 kb on + strand, within MIT1002_00755at 830.202 kb on - strand, within MIT1002_00755at 830.236 kb on - strandat 830.241 kb on - strandat 830.241 kb on - strandat 830.241 kb on - strandat 830.292 kb on - strandat 830.313 kb on - strandat 830.313 kb on - strandat 830.313 kb on - strandat 830.317 kb on + strandat 830.319 kb on + strandat 830.327 kb on + strandat 830.394 kb on - strandat 830.413 kb on - strandat 830.436 kb on - strandat 830.445 kb on + strandat 830.453 kb on - strandat 830.536 kb on + strandat 830.574 kb on + strandat 830.647 kb on - strandat 830.647 kb on - strandat 830.739 kb on + strandat 830.739 kb on + strandat 830.747 kb on - strandat 830.747 kb on - strandat 830.753 kb on - strandat 830.807 kb on + strandat 830.815 kb on - strandat 830.815 kb on - strandat 830.830 kb on + strandat 830.859 kb on + strandat 830.888 kb on - strand, within MIT1002_00756at 830.888 kb on - strand, within MIT1002_00756at 830.909 kb on + strand, within MIT1002_00756at 830.909 kb on + strand, within MIT1002_00756at 830.917 kb on - strand, within MIT1002_00756at 830.917 kb on - strand, within MIT1002_00756at 830.927 kb on - strand, within MIT1002_00756at 830.935 kb on + strand, within MIT1002_00756at 830.953 kb on - strand, within MIT1002_00756at 830.968 kb on - strand, within MIT1002_00756at 830.968 kb on - strand, within MIT1002_00756at 830.978 kb on + strand, within MIT1002_00756at 830.986 kb on - strand, within MIT1002_00756at 831.021 kb on - strand, within MIT1002_00756at 831.063 kb on + strand, within MIT1002_00756at 831.101 kb on + strand, within MIT1002_00756at 831.171 kb on + strand, within MIT1002_00756at 831.181 kb on + strand, within MIT1002_00756at 831.200 kb on - strand, within MIT1002_00756at 831.202 kb on + strand, within MIT1002_00756at 831.205 kb on - strand, within MIT1002_00756at 831.210 kb on - strand, within MIT1002_00756at 831.210 kb on - strand, within MIT1002_00756at 831.210 kb on - strand, within MIT1002_00756at 831.210 kb on - strand, within MIT1002_00756at 831.238 kb on + strand, within MIT1002_00756at 831.293 kb on + strand, within MIT1002_00756at 831.301 kb on - strand, within MIT1002_00756at 831.303 kb on + strand, within MIT1002_00756at 831.311 kb on - strand, within MIT1002_00756at 831.311 kb on - strand, within MIT1002_00756at 831.311 kb on - strand, within MIT1002_00756at 831.311 kb on - strand, within MIT1002_00756at 831.352 kb on + strand, within MIT1002_00756at 831.442 kb on + strand, within MIT1002_00756at 831.450 kb on - strand, within MIT1002_00756at 831.455 kb on - strand, within MIT1002_00756at 831.472 kb on + strand, within MIT1002_00756at 831.479 kb on + strand, within MIT1002_00756at 831.480 kb on + strand, within MIT1002_00756at 831.487 kb on - strand, within MIT1002_00756at 831.518 kb on + strand, within MIT1002_00756at 831.585 kb on + strand, within MIT1002_00756at 831.591 kb on + strand, within MIT1002_00756at 831.593 kb on - strand, within MIT1002_00756at 831.622 kb on - strand, within MIT1002_00756at 831.683 kb on + strand, within MIT1002_00756at 831.704 kb on - strand, within MIT1002_00756at 831.720 kb on + strand, within MIT1002_00756at 831.736 kb on + strand, within MIT1002_00756at 831.736 kb on + strand, within MIT1002_00756at 831.748 kb on - strand, within MIT1002_00756at 831.750 kb on + strand, within MIT1002_00756at 831.758 kb on - strand, within MIT1002_00756at 831.765 kb on + strand, within MIT1002_00756at 831.775 kb on + strand, within MIT1002_00756at 831.775 kb on + strand, within MIT1002_00756at 831.783 kb on - strand, within MIT1002_00756at 831.964 kb on + strand, within MIT1002_00756at 832.014 kb on + strand, within MIT1002_00756at 832.022 kb on - strand, within MIT1002_00756at 832.022 kb on - strand, within MIT1002_00756at 832.034 kb on - strand, within MIT1002_00756at 832.034 kb on - strand, within MIT1002_00756at 832.035 kb on + strand, within MIT1002_00756at 832.037 kb on + strand, within MIT1002_00756at 832.044 kb on - strand, within MIT1002_00756at 832.110 kb on - strand, within MIT1002_00756at 832.167 kb on - strand, within MIT1002_00756at 832.177 kb on - strand, within MIT1002_00756at 832.216 kb on + strand, within MIT1002_00756at 832.216 kb on + strand, within MIT1002_00756at 832.320 kb on + strand, within MIT1002_00756at 832.340 kb on + strand, within MIT1002_00756at 832.340 kb on + strand, within MIT1002_00756at 832.416 kb on + strand, within MIT1002_00756at 832.431 kb on + strand, within MIT1002_00756at 832.461 kb on + strand, within MIT1002_00756at 832.497 kb on - strand, within MIT1002_00756at 832.560 kb on + strand, within MIT1002_00756at 832.573 kb on - strand, within MIT1002_00756at 832.573 kb on - strand, within MIT1002_00756at 832.578 kb on - strand, within MIT1002_00756at 832.578 kb on - strand, within MIT1002_00756at 832.578 kb on - strand, within MIT1002_00756at 832.630 kb on + strand, within MIT1002_00756at 832.635 kb on - strand, within MIT1002_00756at 832.663 kb on + strand, within MIT1002_00756at 832.695 kb on - strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.700 kb on - strand, within MIT1002_00756at 832.702 kb on - strand, within MIT1002_00756at 832.707 kb on - strand, within MIT1002_00756at 832.707 kb on - strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.788 kb on - strand, within MIT1002_00756at 832.804 kb on + strand, within MIT1002_00756at 832.832 kb on + strand, within MIT1002_00756at 832.925 kb on + strand, within MIT1002_00756at 832.925 kb on + strand, within MIT1002_00756at 832.942 kb on + strand, within MIT1002_00756at 833.079 kb on + strandat 833.103 kb on - strandat 833.105 kb on - strandat 833.163 kb on - strandat 833.190 kb on + strandat 833.208 kb on + strandat 833.208 kb on + strandat 833.215 kb on + strandat 833.215 kb on - strandat 833.216 kb on + strandat 833.223 kb on - strandat 833.223 kb on - strandat 833.223 kb on - strandat 833.224 kb on - strandat 833.241 kb on + strandat 833.249 kb on + strandat 833.268 kb on + strandat 833.413 kb on + strandat 833.422 kb on + strandat 833.439 kb on + strandat 833.534 kb on + strand, within MIT1002_00757at 833.561 kb on + strand, within MIT1002_00757at 833.569 kb on + strand, within MIT1002_00757at 833.601 kb on - strand, within MIT1002_00757at 833.603 kb on - strand, within MIT1002_00757at 833.611 kb on - strand, within MIT1002_00757at 833.611 kb on - strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.647 kb on - strand, within MIT1002_00757at 833.722 kb on + strand, within MIT1002_00757at 833.727 kb on - strand, within MIT1002_00757at 833.746 kb on + strand, within MIT1002_00757at 833.756 kb on - strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.778 kb on - strand, within MIT1002_00757at 833.780 kb on - strand, within MIT1002_00757at 833.783 kb on - strand, within MIT1002_00757at 833.845 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.855 kb on - strand, within MIT1002_00757at 833.857 kb on + strand, within MIT1002_00757at 833.898 kb on - strand, within MIT1002_00757at 833.934 kb on + strand, within MIT1002_00757at 833.940 kb on - strand, within MIT1002_00757at 833.942 kb on - strand, within MIT1002_00757at 834.017 kb on - strand, within MIT1002_00757at 834.038 kb on + strand, within MIT1002_00757at 834.078 kb on + strand, within MIT1002_00757at 834.177 kb on + strandat 834.206 kb on - strandat 834.226 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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829,619 + MIT1002_00755 0.69 -1.8
829,744 - MIT1002_00755 0.73 -1.5
829,744 - MIT1002_00755 0.73 +0.5
829,766 + MIT1002_00755 0.74 -0.4
829,774 - MIT1002_00755 0.75 -0.2
829,808 + MIT1002_00755 0.76 -0.7
829,808 + MIT1002_00755 0.76 -0.5
829,826 - MIT1002_00755 0.76 -1.2
829,844 - MIT1002_00755 0.77 -3.0
829,890 + MIT1002_00755 0.79 -1.7
829,910 + MIT1002_00755 0.79 -0.9
829,918 - MIT1002_00755 0.80 -1.8
829,941 - MIT1002_00755 0.81 -1.7
829,981 + MIT1002_00755 0.82 -0.6
829,996 - MIT1002_00755 0.83 -2.7
829,998 + MIT1002_00755 0.83 -0.9
830,061 + MIT1002_00755 0.85 -1.0
830,061 + MIT1002_00755 0.85 -0.5
830,061 + MIT1002_00755 0.85 -0.3
830,063 + MIT1002_00755 0.85 +0.9
830,069 - MIT1002_00755 0.85 -2.9
830,077 - MIT1002_00755 0.85 -3.8
830,079 - MIT1002_00755 0.86 -1.9
830,122 + MIT1002_00755 0.87 -2.7
830,130 + MIT1002_00755 0.87 +0.8
830,155 + MIT1002_00755 0.88 -1.3
830,156 + MIT1002_00755 0.88 -1.3
830,202 - MIT1002_00755 0.90 -3.9
830,236 - -1.8
830,241 - -1.5
830,241 - -3.2
830,241 - -4.0
830,292 - -1.8
830,313 - -1.4
830,313 - -0.7
830,313 - -0.4
830,317 + +0.4
830,319 + -0.7
830,327 + -0.7
830,394 - +0.3
830,413 - -2.7
830,436 - -3.7
830,445 + -0.1
830,453 - -3.6
830,536 + -2.1
830,574 + -0.9
830,647 - -3.4
830,647 - -4.6
830,739 + -3.3
830,739 + -3.6
830,747 - -2.8
830,747 - -3.2
830,753 - -2.7
830,807 + -0.9
830,815 - -2.8
830,815 - -1.2
830,830 + -0.9
830,859 + -2.5
830,888 - MIT1002_00756 0.11 -1.1
830,888 - MIT1002_00756 0.11 -2.0
830,909 + MIT1002_00756 0.12 -4.3
830,909 + MIT1002_00756 0.12 -1.4
830,917 - MIT1002_00756 0.12 -4.7
830,917 - MIT1002_00756 0.12 -4.1
830,927 - MIT1002_00756 0.12 -3.0
830,935 + MIT1002_00756 0.13 -1.1
830,953 - MIT1002_00756 0.13 -1.5
830,968 - MIT1002_00756 0.14 -1.2
830,968 - MIT1002_00756 0.14 -2.2
830,978 + MIT1002_00756 0.14 +0.3
830,986 - MIT1002_00756 0.15 -2.5
831,021 - MIT1002_00756 0.16 -1.2
831,063 + MIT1002_00756 0.18 -1.3
831,101 + MIT1002_00756 0.19 -2.5
831,171 + MIT1002_00756 0.22 -3.3
831,181 + MIT1002_00756 0.22 -1.5
831,200 - MIT1002_00756 0.23 -3.4
831,202 + MIT1002_00756 0.23 -1.3
831,205 - MIT1002_00756 0.23 -2.1
831,210 - MIT1002_00756 0.23 -0.6
831,210 - MIT1002_00756 0.23 -2.6
831,210 - MIT1002_00756 0.23 -2.4
831,210 - MIT1002_00756 0.23 -2.1
831,238 + MIT1002_00756 0.24 -1.8
831,293 + MIT1002_00756 0.26 -1.8
831,301 - MIT1002_00756 0.27 -2.6
831,303 + MIT1002_00756 0.27 -0.7
831,311 - MIT1002_00756 0.27 -3.6
831,311 - MIT1002_00756 0.27 -1.4
831,311 - MIT1002_00756 0.27 -2.0
831,311 - MIT1002_00756 0.27 -2.1
831,352 + MIT1002_00756 0.28 -3.8
831,442 + MIT1002_00756 0.32 -2.2
831,450 - MIT1002_00756 0.32 -2.3
831,455 - MIT1002_00756 0.32 -2.0
831,472 + MIT1002_00756 0.33 -3.3
831,479 + MIT1002_00756 0.33 -1.3
831,480 + MIT1002_00756 0.33 -2.9
831,487 - MIT1002_00756 0.34 -1.8
831,518 + MIT1002_00756 0.35 -1.7
831,585 + MIT1002_00756 0.37 -2.1
831,591 + MIT1002_00756 0.37 -2.5
831,593 - MIT1002_00756 0.38 -2.4
831,622 - MIT1002_00756 0.39 -2.2
831,683 + MIT1002_00756 0.41 -1.3
831,704 - MIT1002_00756 0.42 -2.2
831,720 + MIT1002_00756 0.42 -2.8
831,736 + MIT1002_00756 0.43 -4.6
831,736 + MIT1002_00756 0.43 -3.1
831,748 - MIT1002_00756 0.43 -0.8
831,750 + MIT1002_00756 0.43 -1.8
831,758 - MIT1002_00756 0.44 -1.4
831,765 + MIT1002_00756 0.44 -2.2
831,775 + MIT1002_00756 0.44 -2.9
831,775 + MIT1002_00756 0.44 -1.3
831,783 - MIT1002_00756 0.45 -2.0
831,964 + MIT1002_00756 0.52 -1.0
832,014 + MIT1002_00756 0.53 -0.9
832,022 - MIT1002_00756 0.54 -2.4
832,022 - MIT1002_00756 0.54 -2.6
832,034 - MIT1002_00756 0.54 -2.0
832,034 - MIT1002_00756 0.54 -1.7
832,035 + MIT1002_00756 0.54 -2.7
832,037 + MIT1002_00756 0.54 -0.1
832,044 - MIT1002_00756 0.55 -2.5
832,110 - MIT1002_00756 0.57 -3.0
832,167 - MIT1002_00756 0.59 -1.5
832,177 - MIT1002_00756 0.60 -4.0
832,216 + MIT1002_00756 0.61 -2.0
832,216 + MIT1002_00756 0.61 -2.7
832,320 + MIT1002_00756 0.65 -1.9
832,340 + MIT1002_00756 0.66 -3.6
832,340 + MIT1002_00756 0.66 -4.0
832,416 + MIT1002_00756 0.69 -2.4
832,431 + MIT1002_00756 0.69 -1.9
832,461 + MIT1002_00756 0.70 -1.5
832,497 - MIT1002_00756 0.72 -2.4
832,560 + MIT1002_00756 0.74 -2.5
832,573 - MIT1002_00756 0.75 -3.8
832,573 - MIT1002_00756 0.75 -2.7
832,578 - MIT1002_00756 0.75 -1.6
832,578 - MIT1002_00756 0.75 -2.1
832,578 - MIT1002_00756 0.75 -1.2
832,630 + MIT1002_00756 0.77 -3.9
832,635 - MIT1002_00756 0.77 -4.1
832,663 + MIT1002_00756 0.78 -2.5
832,695 - MIT1002_00756 0.79 -3.4
832,699 + MIT1002_00756 0.79 -2.4
832,699 + MIT1002_00756 0.79 -2.0
832,699 + MIT1002_00756 0.79 -1.1
832,699 + MIT1002_00756 0.79 -1.9
832,700 - MIT1002_00756 0.79 -3.2
832,702 - MIT1002_00756 0.79 -0.4
832,707 - MIT1002_00756 0.80 -3.5
832,707 - MIT1002_00756 0.80 -2.6
832,749 + MIT1002_00756 0.81 -2.3
832,749 + MIT1002_00756 0.81 -3.2
832,749 + MIT1002_00756 0.81 -2.7
832,749 + MIT1002_00756 0.81 -3.4
832,749 + MIT1002_00756 0.81 -0.8
832,757 - MIT1002_00756 0.81 +0.3
832,757 - MIT1002_00756 0.81 -4.2
832,757 - MIT1002_00756 0.81 -2.3
832,757 - MIT1002_00756 0.81 -3.9
832,757 - MIT1002_00756 0.81 -2.5
832,757 - MIT1002_00756 0.81 -2.3
832,788 - MIT1002_00756 0.83 -2.3
832,804 + MIT1002_00756 0.83 -3.6
832,832 + MIT1002_00756 0.84 -1.3
832,925 + MIT1002_00756 0.88 -2.1
832,925 + MIT1002_00756 0.88 -2.4
832,942 + MIT1002_00756 0.88 -2.1
833,079 + -2.2
833,103 - -1.2
833,105 - -0.0
833,163 - -1.1
833,190 + -2.8
833,208 + -3.0
833,208 + -3.7
833,215 + -2.2
833,215 - -0.5
833,216 + -2.0
833,223 - -2.2
833,223 - -2.4
833,223 - -1.8
833,224 - -2.2
833,241 + +1.0
833,249 + +1.5
833,268 + +0.6
833,413 + -0.2
833,422 + -3.0
833,439 + -1.1
833,534 + MIT1002_00757 0.14 -2.3
833,561 + MIT1002_00757 0.18 -2.9
833,569 + MIT1002_00757 0.19 -2.4
833,601 - MIT1002_00757 0.23 -2.6
833,603 - MIT1002_00757 0.24 +0.2
833,611 - MIT1002_00757 0.25 -2.8
833,611 - MIT1002_00757 0.25 -0.4
833,632 + MIT1002_00757 0.27 -2.4
833,632 + MIT1002_00757 0.27 -1.1
833,632 + MIT1002_00757 0.27 -2.2
833,640 - MIT1002_00757 0.28 -3.0
833,640 - MIT1002_00757 0.28 -1.8
833,640 - MIT1002_00757 0.28 -2.9
833,647 - MIT1002_00757 0.29 -0.6
833,722 + MIT1002_00757 0.39 -1.9
833,727 - MIT1002_00757 0.40 -1.3
833,746 + MIT1002_00757 0.42 -1.5
833,756 - MIT1002_00757 0.44 -0.7
833,770 + MIT1002_00757 0.46 -2.9
833,770 + MIT1002_00757 0.46 -2.0
833,770 + MIT1002_00757 0.46 -3.8
833,778 - MIT1002_00757 0.47 -3.4
833,780 - MIT1002_00757 0.47 -1.4
833,783 - MIT1002_00757 0.47 -1.1
833,845 + MIT1002_00757 0.55 -1.4
833,847 + MIT1002_00757 0.56 -3.2
833,847 + MIT1002_00757 0.56 -3.5
833,847 + MIT1002_00757 0.56 -1.6
833,847 + MIT1002_00757 0.56 -1.4
833,847 + MIT1002_00757 0.56 -2.2
833,855 - MIT1002_00757 0.57 -3.2
833,857 + MIT1002_00757 0.57 -1.7
833,898 - MIT1002_00757 0.62 -2.4
833,934 + MIT1002_00757 0.67 -2.0
833,940 - MIT1002_00757 0.68 -2.8
833,942 - MIT1002_00757 0.68 -2.5
834,017 - MIT1002_00757 0.78 -0.9
834,038 + MIT1002_00757 0.81 -1.7
834,078 + MIT1002_00757 0.86 -0.5
834,177 + -3.4
834,206 - -1.2
834,226 + -3.7

Or see this region's nucleotide sequence