Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00753 and MIT1002_00754 are separated by 228 nucleotides MIT1002_00754 and MIT1002_00755 are separated by 25 nucleotides MIT1002_00755 and MIT1002_00756 are separated by 117 nucleotides
MIT1002_00753: MIT1002_00753 - Phosphate-binding protein PstS 1 precursor, at 826,245 to 827,276
_00753
MIT1002_00754: MIT1002_00754 - hypothetical protein, at 827,505 to 827,675
_00754
MIT1002_00755: MIT1002_00755 - hypothetical protein, at 827,701 to 830,481
_00755
MIT1002_00756: MIT1002_00756 - TonB-dependent receptor, at 830,599 to 833,247
_00756
Position (kb) 827
828
829
830
831 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 826.731 kb on - strand, within MIT1002_00753 at 826.731 kb on - strand, within MIT1002_00753 at 826.787 kb on - strand, within MIT1002_00753 at 826.812 kb on - strand, within MIT1002_00753 at 826.844 kb on - strand, within MIT1002_00753 at 827.027 kb on + strand, within MIT1002_00753 at 827.027 kb on + strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.035 kb on - strand, within MIT1002_00753 at 827.058 kb on - strand, within MIT1002_00753 at 827.141 kb on + strand, within MIT1002_00753 at 827.141 kb on + strand, within MIT1002_00753 at 827.149 kb on - strand, within MIT1002_00753 at 827.149 kb on - strand, within MIT1002_00753 at 827.250 kb on + strand at 827.280 kb on + strand at 827.285 kb on + strand at 827.293 kb on - strand at 827.362 kb on + strand at 827.557 kb on - strand, within MIT1002_00754 at 827.653 kb on - strand, within MIT1002_00754 at 827.688 kb on - strand at 827.732 kb on - strand at 827.758 kb on + strand at 827.802 kb on - strand at 827.880 kb on - strand at 827.880 kb on - strand at 827.888 kb on + strand at 827.930 kb on + strand at 827.971 kb on - strand at 828.021 kb on - strand, within MIT1002_00755 at 828.048 kb on + strand, within MIT1002_00755 at 828.056 kb on - strand, within MIT1002_00755 at 828.062 kb on + strand, within MIT1002_00755 at 828.158 kb on + strand, within MIT1002_00755 at 828.166 kb on - strand, within MIT1002_00755 at 828.166 kb on - strand, within MIT1002_00755 at 828.177 kb on + strand, within MIT1002_00755 at 828.199 kb on + strand, within MIT1002_00755 at 828.213 kb on + strand, within MIT1002_00755 at 828.223 kb on + strand, within MIT1002_00755 at 828.223 kb on + strand, within MIT1002_00755 at 828.248 kb on - strand, within MIT1002_00755 at 828.291 kb on - strand, within MIT1002_00755 at 828.319 kb on - strand, within MIT1002_00755 at 828.336 kb on - strand, within MIT1002_00755 at 828.336 kb on - strand, within MIT1002_00755 at 828.356 kb on + strand, within MIT1002_00755 at 828.356 kb on + strand, within MIT1002_00755 at 828.364 kb on - strand, within MIT1002_00755 at 828.373 kb on - strand, within MIT1002_00755 at 828.428 kb on + strand, within MIT1002_00755 at 828.436 kb on - strand, within MIT1002_00755 at 828.463 kb on - strand, within MIT1002_00755 at 828.478 kb on + strand, within MIT1002_00755 at 828.614 kb on - strand, within MIT1002_00755 at 828.623 kb on + strand, within MIT1002_00755 at 828.625 kb on + strand, within MIT1002_00755 at 828.625 kb on + strand, within MIT1002_00755 at 828.633 kb on - strand, within MIT1002_00755 at 828.658 kb on - strand, within MIT1002_00755 at 828.753 kb on + strand, within MIT1002_00755 at 828.759 kb on + strand, within MIT1002_00755 at 828.761 kb on + strand, within MIT1002_00755 at 828.769 kb on - strand, within MIT1002_00755 at 828.769 kb on - strand, within MIT1002_00755 at 828.866 kb on + strand, within MIT1002_00755 at 828.917 kb on + strand, within MIT1002_00755 at 828.917 kb on + strand, within MIT1002_00755 at 828.925 kb on - strand, within MIT1002_00755 at 828.925 kb on - strand, within MIT1002_00755 at 828.925 kb on - strand, within MIT1002_00755 at 828.930 kb on + strand, within MIT1002_00755 at 828.998 kb on + strand, within MIT1002_00755 at 829.006 kb on - strand, within MIT1002_00755 at 829.055 kb on + strand, within MIT1002_00755 at 829.061 kb on - strand, within MIT1002_00755 at 829.150 kb on + strand, within MIT1002_00755 at 829.158 kb on - strand, within MIT1002_00755 at 829.158 kb on - strand, within MIT1002_00755 at 829.193 kb on - strand, within MIT1002_00755 at 829.193 kb on - strand, within MIT1002_00755 at 829.212 kb on - strand, within MIT1002_00755 at 829.212 kb on - strand, within MIT1002_00755 at 829.236 kb on - strand, within MIT1002_00755 at 829.248 kb on - strand, within MIT1002_00755 at 829.259 kb on - strand, within MIT1002_00755 at 829.280 kb on - strand, within MIT1002_00755 at 829.292 kb on + strand, within MIT1002_00755 at 829.372 kb on - strand, within MIT1002_00755 at 829.378 kb on - strand, within MIT1002_00755 at 829.384 kb on - strand, within MIT1002_00755 at 829.390 kb on - strand, within MIT1002_00755 at 829.394 kb on + strand, within MIT1002_00755 at 829.460 kb on + strand, within MIT1002_00755 at 829.511 kb on + strand, within MIT1002_00755 at 829.595 kb on - strand, within MIT1002_00755 at 829.619 kb on + strand, within MIT1002_00755 at 829.744 kb on - strand, within MIT1002_00755 at 829.744 kb on - strand, within MIT1002_00755 at 829.766 kb on + strand, within MIT1002_00755 at 829.774 kb on - strand, within MIT1002_00755 at 829.808 kb on + strand, within MIT1002_00755 at 829.808 kb on + strand, within MIT1002_00755 at 829.826 kb on - strand, within MIT1002_00755 at 829.844 kb on - strand, within MIT1002_00755 at 829.890 kb on + strand, within MIT1002_00755 at 829.910 kb on + strand, within MIT1002_00755 at 829.918 kb on - strand, within MIT1002_00755 at 829.941 kb on - strand, within MIT1002_00755 at 829.981 kb on + strand, within MIT1002_00755 at 829.996 kb on - strand, within MIT1002_00755 at 829.998 kb on + strand, within MIT1002_00755 at 830.061 kb on + strand, within MIT1002_00755 at 830.061 kb on + strand, within MIT1002_00755 at 830.061 kb on + strand, within MIT1002_00755 at 830.063 kb on + strand, within MIT1002_00755 at 830.069 kb on - strand, within MIT1002_00755 at 830.077 kb on - strand, within MIT1002_00755 at 830.079 kb on - strand, within MIT1002_00755 at 830.122 kb on + strand, within MIT1002_00755 at 830.130 kb on + strand, within MIT1002_00755 at 830.155 kb on + strand, within MIT1002_00755 at 830.156 kb on + strand, within MIT1002_00755 at 830.202 kb on - strand, within MIT1002_00755 at 830.236 kb on - strand at 830.241 kb on - strand at 830.241 kb on - strand at 830.241 kb on - strand at 830.292 kb on - strand at 830.313 kb on - strand at 830.313 kb on - strand at 830.313 kb on - strand at 830.317 kb on + strand at 830.319 kb on + strand at 830.327 kb on + strand at 830.394 kb on - strand at 830.413 kb on - strand at 830.436 kb on - strand at 830.445 kb on + strand at 830.453 kb on - strand at 830.536 kb on + strand at 830.574 kb on + strand at 830.647 kb on - strand at 830.647 kb on - strand at 830.739 kb on + strand at 830.739 kb on + strand at 830.747 kb on - strand at 830.747 kb on - strand at 830.753 kb on - strand at 830.807 kb on + strand at 830.815 kb on - strand at 830.815 kb on - strand at 830.830 kb on + strand at 830.859 kb on + strand at 830.888 kb on - strand, within MIT1002_00756 at 830.888 kb on - strand, within MIT1002_00756 at 830.909 kb on + strand, within MIT1002_00756 at 830.909 kb on + strand, within MIT1002_00756 at 830.917 kb on - strand, within MIT1002_00756 at 830.917 kb on - strand, within MIT1002_00756 at 830.927 kb on - strand, within MIT1002_00756 at 830.935 kb on + strand, within MIT1002_00756 at 830.953 kb on - strand, within MIT1002_00756 at 830.968 kb on - strand, within MIT1002_00756 at 830.968 kb on - strand, within MIT1002_00756 at 830.978 kb on + strand, within MIT1002_00756 at 830.986 kb on - strand, within MIT1002_00756 at 831.021 kb on - strand, within MIT1002_00756 at 831.063 kb on + strand, within MIT1002_00756 at 831.101 kb on + strand, within MIT1002_00756 at 831.171 kb on + strand, within MIT1002_00756 at 831.181 kb on + strand, within MIT1002_00756 at 831.200 kb on - strand, within MIT1002_00756 at 831.202 kb on + strand, within MIT1002_00756 at 831.205 kb on - strand, within MIT1002_00756 at 831.210 kb on - strand, within MIT1002_00756 at 831.210 kb on - strand, within MIT1002_00756 at 831.210 kb on - strand, within MIT1002_00756 at 831.210 kb on - strand, within MIT1002_00756 at 831.238 kb on + strand, within MIT1002_00756 at 831.293 kb on + strand, within MIT1002_00756 at 831.301 kb on - strand, within MIT1002_00756 at 831.303 kb on + strand, within MIT1002_00756 at 831.311 kb on - strand, within MIT1002_00756 at 831.311 kb on - strand, within MIT1002_00756 at 831.311 kb on - strand, within MIT1002_00756 at 831.311 kb on - strand, within MIT1002_00756 at 831.352 kb on + strand, within MIT1002_00756 at 831.442 kb on + strand, within MIT1002_00756 at 831.450 kb on - strand, within MIT1002_00756 at 831.455 kb on - strand, within MIT1002_00756 at 831.472 kb on + strand, within MIT1002_00756 at 831.479 kb on + strand, within MIT1002_00756 at 831.480 kb on + strand, within MIT1002_00756
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 826,731 - MIT1002_00753 0.47 -0.1 826,731 - MIT1002_00753 0.47 -0.5 826,787 - MIT1002_00753 0.53 -0.7 826,812 - MIT1002_00753 0.55 +0.0 826,844 - MIT1002_00753 0.58 +0.2 827,027 + MIT1002_00753 0.76 +0.3 827,027 + MIT1002_00753 0.76 -2.4 827,035 - MIT1002_00753 0.77 -0.6 827,035 - MIT1002_00753 0.77 -1.2 827,035 - MIT1002_00753 0.77 +0.0 827,035 - MIT1002_00753 0.77 -0.6 827,035 - MIT1002_00753 0.77 +1.7 827,035 - MIT1002_00753 0.77 -2.0 827,058 - MIT1002_00753 0.79 -0.7 827,141 + MIT1002_00753 0.87 -0.7 827,141 + MIT1002_00753 0.87 -2.2 827,149 - MIT1002_00753 0.88 -1.4 827,149 - MIT1002_00753 0.88 +0.3 827,250 + -1.7 827,280 + +0.2 827,285 + -0.4 827,293 - +0.4 827,362 + -0.0 827,557 - MIT1002_00754 0.30 +1.6 827,653 - MIT1002_00754 0.87 -1.6 827,688 - -1.7 827,732 - -4.5 827,758 + -4.1 827,802 - -1.2 827,880 - +0.2 827,880 - -2.9 827,888 + -2.5 827,930 + -1.2 827,971 - -1.8 828,021 - MIT1002_00755 0.12 -1.5 828,048 + MIT1002_00755 0.12 -2.1 828,056 - MIT1002_00755 0.13 -3.4 828,062 + MIT1002_00755 0.13 -2.5 828,158 + MIT1002_00755 0.16 -3.0 828,166 - MIT1002_00755 0.17 -3.5 828,166 - MIT1002_00755 0.17 -2.6 828,177 + MIT1002_00755 0.17 -2.4 828,199 + MIT1002_00755 0.18 -1.0 828,213 + MIT1002_00755 0.18 -3.0 828,223 + MIT1002_00755 0.19 -0.9 828,223 + MIT1002_00755 0.19 -2.2 828,248 - MIT1002_00755 0.20 -1.2 828,291 - MIT1002_00755 0.21 -0.7 828,319 - MIT1002_00755 0.22 -2.0 828,336 - MIT1002_00755 0.23 -2.8 828,336 - MIT1002_00755 0.23 -2.2 828,356 + MIT1002_00755 0.24 -1.8 828,356 + MIT1002_00755 0.24 -1.2 828,364 - MIT1002_00755 0.24 -3.6 828,373 - MIT1002_00755 0.24 -0.8 828,428 + MIT1002_00755 0.26 -3.7 828,436 - MIT1002_00755 0.26 -1.7 828,463 - MIT1002_00755 0.27 -3.0 828,478 + MIT1002_00755 0.28 -1.8 828,614 - MIT1002_00755 0.33 -2.5 828,623 + MIT1002_00755 0.33 -4.7 828,625 + MIT1002_00755 0.33 -1.8 828,625 + MIT1002_00755 0.33 -0.2 828,633 - MIT1002_00755 0.34 -2.9 828,658 - MIT1002_00755 0.34 -2.1 828,753 + MIT1002_00755 0.38 -2.9 828,759 + MIT1002_00755 0.38 -1.9 828,761 + MIT1002_00755 0.38 -1.5 828,769 - MIT1002_00755 0.38 -4.0 828,769 - MIT1002_00755 0.38 -1.9 828,866 + MIT1002_00755 0.42 -2.9 828,917 + MIT1002_00755 0.44 -2.4 828,917 + MIT1002_00755 0.44 -3.5 828,925 - MIT1002_00755 0.44 -0.9 828,925 - MIT1002_00755 0.44 -4.5 828,925 - MIT1002_00755 0.44 -2.5 828,930 + MIT1002_00755 0.44 -2.2 828,998 + MIT1002_00755 0.47 -4.2 829,006 - MIT1002_00755 0.47 -2.0 829,055 + MIT1002_00755 0.49 -2.9 829,061 - MIT1002_00755 0.49 -3.5 829,150 + MIT1002_00755 0.52 -4.8 829,158 - MIT1002_00755 0.52 -1.9 829,158 - MIT1002_00755 0.52 -2.5 829,193 - MIT1002_00755 0.54 -1.4 829,193 - MIT1002_00755 0.54 -1.8 829,212 - MIT1002_00755 0.54 -2.9 829,212 - MIT1002_00755 0.54 -1.4 829,236 - MIT1002_00755 0.55 -0.3 829,248 - MIT1002_00755 0.56 -1.4 829,259 - MIT1002_00755 0.56 -2.6 829,280 - MIT1002_00755 0.57 -1.9 829,292 + MIT1002_00755 0.57 -2.0 829,372 - MIT1002_00755 0.60 -2.7 829,378 - MIT1002_00755 0.60 -3.2 829,384 - MIT1002_00755 0.61 -3.7 829,390 - MIT1002_00755 0.61 -1.0 829,394 + MIT1002_00755 0.61 -0.9 829,460 + MIT1002_00755 0.63 -1.3 829,511 + MIT1002_00755 0.65 -0.4 829,595 - MIT1002_00755 0.68 -1.9 829,619 + MIT1002_00755 0.69 -1.8 829,744 - MIT1002_00755 0.73 -1.5 829,744 - MIT1002_00755 0.73 +0.5 829,766 + MIT1002_00755 0.74 -0.4 829,774 - MIT1002_00755 0.75 -0.2 829,808 + MIT1002_00755 0.76 -0.7 829,808 + MIT1002_00755 0.76 -0.5 829,826 - MIT1002_00755 0.76 -1.2 829,844 - MIT1002_00755 0.77 -3.0 829,890 + MIT1002_00755 0.79 -1.7 829,910 + MIT1002_00755 0.79 -0.9 829,918 - MIT1002_00755 0.80 -1.8 829,941 - MIT1002_00755 0.81 -1.7 829,981 + MIT1002_00755 0.82 -0.6 829,996 - MIT1002_00755 0.83 -2.7 829,998 + MIT1002_00755 0.83 -0.9 830,061 + MIT1002_00755 0.85 -1.0 830,061 + MIT1002_00755 0.85 -0.5 830,061 + MIT1002_00755 0.85 -0.3 830,063 + MIT1002_00755 0.85 +0.9 830,069 - MIT1002_00755 0.85 -2.9 830,077 - MIT1002_00755 0.85 -3.8 830,079 - MIT1002_00755 0.86 -1.9 830,122 + MIT1002_00755 0.87 -2.7 830,130 + MIT1002_00755 0.87 +0.8 830,155 + MIT1002_00755 0.88 -1.3 830,156 + MIT1002_00755 0.88 -1.3 830,202 - MIT1002_00755 0.90 -3.9 830,236 - -1.8 830,241 - -1.5 830,241 - -3.2 830,241 - -4.0 830,292 - -1.8 830,313 - -1.4 830,313 - -0.7 830,313 - -0.4 830,317 + +0.4 830,319 + -0.7 830,327 + -0.7 830,394 - +0.3 830,413 - -2.7 830,436 - -3.7 830,445 + -0.1 830,453 - -3.6 830,536 + -2.1 830,574 + -0.9 830,647 - -3.4 830,647 - -4.6 830,739 + -3.3 830,739 + -3.6 830,747 - -2.8 830,747 - -3.2 830,753 - -2.7 830,807 + -0.9 830,815 - -2.8 830,815 - -1.2 830,830 + -0.9 830,859 + -2.5 830,888 - MIT1002_00756 0.11 -1.1 830,888 - MIT1002_00756 0.11 -2.0 830,909 + MIT1002_00756 0.12 -4.3 830,909 + MIT1002_00756 0.12 -1.4 830,917 - MIT1002_00756 0.12 -4.7 830,917 - MIT1002_00756 0.12 -4.1 830,927 - MIT1002_00756 0.12 -3.0 830,935 + MIT1002_00756 0.13 -1.1 830,953 - MIT1002_00756 0.13 -1.5 830,968 - MIT1002_00756 0.14 -1.2 830,968 - MIT1002_00756 0.14 -2.2 830,978 + MIT1002_00756 0.14 +0.3 830,986 - MIT1002_00756 0.15 -2.5 831,021 - MIT1002_00756 0.16 -1.2 831,063 + MIT1002_00756 0.18 -1.3 831,101 + MIT1002_00756 0.19 -2.5 831,171 + MIT1002_00756 0.22 -3.3 831,181 + MIT1002_00756 0.22 -1.5 831,200 - MIT1002_00756 0.23 -3.4 831,202 + MIT1002_00756 0.23 -1.3 831,205 - MIT1002_00756 0.23 -2.1 831,210 - MIT1002_00756 0.23 -0.6 831,210 - MIT1002_00756 0.23 -2.6 831,210 - MIT1002_00756 0.23 -2.4 831,210 - MIT1002_00756 0.23 -2.1 831,238 + MIT1002_00756 0.24 -1.8 831,293 + MIT1002_00756 0.26 -1.8 831,301 - MIT1002_00756 0.27 -2.6 831,303 + MIT1002_00756 0.27 -0.7 831,311 - MIT1002_00756 0.27 -3.6 831,311 - MIT1002_00756 0.27 -1.4 831,311 - MIT1002_00756 0.27 -2.0 831,311 - MIT1002_00756 0.27 -2.1 831,352 + MIT1002_00756 0.28 -3.8 831,442 + MIT1002_00756 0.32 -2.2 831,450 - MIT1002_00756 0.32 -2.3 831,455 - MIT1002_00756 0.32 -2.0 831,472 + MIT1002_00756 0.33 -3.3 831,479 + MIT1002_00756 0.33 -1.3 831,480 + MIT1002_00756 0.33 -2.9
Or see this region's nucleotide sequence