Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00751

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00750 and MIT1002_00751 are separated by 308 nucleotidesMIT1002_00751 and MIT1002_00752 are separated by 100 nucleotides MIT1002_00750: MIT1002_00750 - Sensor kinase protein RcsC, at 822,152 to 823,828 _00750 MIT1002_00751: MIT1002_00751 - Phosphate regulon transcriptional regulatory protein PhoB, at 824,137 to 824,826 _00751 MIT1002_00752: MIT1002_00752 - Phosphate regulon sensor protein PhoR, at 824,927 to 826,228 _00752 Position (kb) 824 825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 823.155 kb on + strand, within MIT1002_00750at 823.155 kb on + strand, within MIT1002_00750at 823.207 kb on - strand, within MIT1002_00750at 823.217 kb on - strand, within MIT1002_00750at 823.264 kb on + strand, within MIT1002_00750at 823.266 kb on + strand, within MIT1002_00750at 823.272 kb on - strand, within MIT1002_00750at 823.272 kb on - strand, within MIT1002_00750at 823.300 kb on + strand, within MIT1002_00750at 823.411 kb on + strand, within MIT1002_00750at 823.465 kb on + strand, within MIT1002_00750at 823.558 kb on + strand, within MIT1002_00750at 823.558 kb on + strand, within MIT1002_00750at 823.558 kb on + strand, within MIT1002_00750at 823.561 kb on - strand, within MIT1002_00750at 823.566 kb on - strand, within MIT1002_00750at 823.566 kb on - strand, within MIT1002_00750at 823.571 kb on - strand, within MIT1002_00750at 823.578 kb on - strand, within MIT1002_00750at 823.583 kb on - strand, within MIT1002_00750at 823.619 kb on + strand, within MIT1002_00750at 823.621 kb on + strand, within MIT1002_00750at 823.648 kb on + strand, within MIT1002_00750at 823.649 kb on + strand, within MIT1002_00750at 823.714 kb on - strandat 823.782 kb on + strandat 823.792 kb on + strandat 823.800 kb on - strandat 823.805 kb on - strandat 823.841 kb on + strandat 823.841 kb on + strandat 823.849 kb on - strandat 823.849 kb on - strandat 823.849 kb on - strandat 823.849 kb on - strandat 823.861 kb on + strandat 823.866 kb on + strandat 823.866 kb on + strandat 823.874 kb on - strandat 823.874 kb on - strandat 823.874 kb on - strandat 823.967 kb on + strandat 824.147 kb on - strandat 824.149 kb on - strandat 824.286 kb on - strand, within MIT1002_00751at 824.326 kb on - strand, within MIT1002_00751at 824.326 kb on - strand, within MIT1002_00751at 824.336 kb on + strand, within MIT1002_00751at 824.660 kb on + strand, within MIT1002_00751at 824.850 kb on + strandat 824.862 kb on + strandat 824.906 kb on - strandat 824.957 kb on + strandat 824.969 kb on + strandat 824.969 kb on + strandat 824.969 kb on + strandat 824.969 kb on + strandat 824.969 kb on + strandat 824.977 kb on - strandat 824.977 kb on - strandat 825.039 kb on + strandat 825.039 kb on + strandat 825.113 kb on - strand, within MIT1002_00752at 825.176 kb on - strand, within MIT1002_00752at 825.234 kb on + strand, within MIT1002_00752at 825.235 kb on + strand, within MIT1002_00752

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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823,155 + MIT1002_00750 0.60 -0.4
823,155 + MIT1002_00750 0.60 -0.3
823,207 - MIT1002_00750 0.63 +0.3
823,217 - MIT1002_00750 0.64 -0.2
823,264 + MIT1002_00750 0.66 +0.7
823,266 + MIT1002_00750 0.66 +0.3
823,272 - MIT1002_00750 0.67 -0.1
823,272 - MIT1002_00750 0.67 -0.7
823,300 + MIT1002_00750 0.68 +1.4
823,411 + MIT1002_00750 0.75 -4.1
823,465 + MIT1002_00750 0.78 -0.8
823,558 + MIT1002_00750 0.84 +2.4
823,558 + MIT1002_00750 0.84 -1.2
823,558 + MIT1002_00750 0.84 +1.2
823,561 - MIT1002_00750 0.84 -0.6
823,566 - MIT1002_00750 0.84 +0.9
823,566 - MIT1002_00750 0.84 +0.8
823,571 - MIT1002_00750 0.85 -0.1
823,578 - MIT1002_00750 0.85 +0.2
823,583 - MIT1002_00750 0.85 -0.2
823,619 + MIT1002_00750 0.87 +0.2
823,621 + MIT1002_00750 0.88 +0.3
823,648 + MIT1002_00750 0.89 +1.3
823,649 + MIT1002_00750 0.89 +1.2
823,714 - -0.6
823,782 + -1.0
823,792 + +2.1
823,800 - +0.5
823,805 - -1.2
823,841 + +1.3
823,841 + +0.1
823,849 - +0.1
823,849 - +0.7
823,849 - +0.0
823,849 - -0.6
823,861 + +0.5
823,866 + +0.1
823,866 + +1.1
823,874 - +1.3
823,874 - -0.4
823,874 - +0.6
823,967 + -0.4
824,147 - -0.1
824,149 - -0.1
824,286 - MIT1002_00751 0.22 -2.6
824,326 - MIT1002_00751 0.27 -1.2
824,326 - MIT1002_00751 0.27 +0.6
824,336 + MIT1002_00751 0.29 -1.7
824,660 + MIT1002_00751 0.76 -0.5
824,850 + +0.5
824,862 + +0.2
824,906 - -1.0
824,957 + -0.4
824,969 + -0.8
824,969 + -0.7
824,969 + +0.1
824,969 + -1.1
824,969 + -2.9
824,977 - -0.7
824,977 - -2.5
825,039 + -0.9
825,039 + -0.1
825,113 - MIT1002_00752 0.14 -0.4
825,176 - MIT1002_00752 0.19 -0.9
825,234 + MIT1002_00752 0.24 -0.1
825,235 + MIT1002_00752 0.24 -0.4

Or see this region's nucleotide sequence