Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00520 and MIT1002_00521 are separated by 278 nucleotides MIT1002_00521 and MIT1002_00522 overlap by 4 nucleotides
MIT1002_00520: MIT1002_00520 - Sodium/proton antiporter NhaA, at 566,728 to 568,002
_00520
MIT1002_00521: MIT1002_00521 - N5-carboxyaminoimidazole ribonucleotide mutase, at 568,281 to 568,775
_00521
MIT1002_00522: MIT1002_00522 - N5-carboxyaminoimidazole ribonucleotide synthase, at 568,772 to 569,908
_00522
Position (kb) 568
569 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 567.398 kb on + strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.405 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.528 kb on - strand, within MIT1002_00520 at 567.604 kb on - strand, within MIT1002_00520 at 567.644 kb on - strand, within MIT1002_00520 at 567.653 kb on - strand, within MIT1002_00520 at 567.721 kb on + strand, within MIT1002_00520 at 567.726 kb on + strand, within MIT1002_00520 at 567.750 kb on + strand, within MIT1002_00520 at 567.758 kb on - strand, within MIT1002_00520 at 567.762 kb on + strand, within MIT1002_00520 at 567.837 kb on - strand, within MIT1002_00520 at 567.837 kb on - strand, within MIT1002_00520 at 567.954 kb on - strand at 567.954 kb on - strand at 568.030 kb on - strand at 568.150 kb on + strand at 568.158 kb on - strand at 568.165 kb on + strand at 568.195 kb on - strand at 568.319 kb on - strand at 568.337 kb on - strand, within MIT1002_00521 at 568.405 kb on - strand, within MIT1002_00521 at 568.405 kb on - strand, within MIT1002_00521 at 568.435 kb on + strand, within MIT1002_00521 at 568.440 kb on - strand, within MIT1002_00521 at 568.515 kb on + strand, within MIT1002_00521 at 568.551 kb on - strand, within MIT1002_00521 at 568.561 kb on + strand, within MIT1002_00521 at 568.574 kb on + strand, within MIT1002_00521 at 568.799 kb on - strand at 568.926 kb on + strand, within MIT1002_00522 at 568.943 kb on - strand, within MIT1002_00522 at 568.946 kb on - strand, within MIT1002_00522 at 568.978 kb on - strand, within MIT1002_00522 at 569.020 kb on - strand, within MIT1002_00522 at 569.157 kb on + strand, within MIT1002_00522 at 569.332 kb on + strand, within MIT1002_00522 at 569.364 kb on - strand, within MIT1002_00522 at 569.366 kb on - strand, within MIT1002_00522 at 569.366 kb on - strand, within MIT1002_00522 at 569.398 kb on - strand, within MIT1002_00522 at 569.449 kb on + strand, within MIT1002_00522 at 569.479 kb on + strand, within MIT1002_00522 at 569.480 kb on + strand, within MIT1002_00522 at 569.488 kb on - strand, within MIT1002_00522 at 569.515 kb on + strand, within MIT1002_00522 at 569.523 kb on - strand, within MIT1002_00522 at 569.576 kb on - strand, within MIT1002_00522 at 569.724 kb on + strand, within MIT1002_00522 at 569.732 kb on - strand, within MIT1002_00522 at 569.738 kb on + strand, within MIT1002_00522 at 569.738 kb on + strand, within MIT1002_00522
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 567,398 + MIT1002_00520 0.53 +0.3 567,403 - MIT1002_00520 0.53 -0.5 567,403 - MIT1002_00520 0.53 +0.1 567,403 - MIT1002_00520 0.53 -0.3 567,405 + MIT1002_00520 0.53 -1.1 567,428 + MIT1002_00520 0.55 -0.3 567,428 + MIT1002_00520 0.55 -1.3 567,428 + MIT1002_00520 0.55 +0.7 567,428 + MIT1002_00520 0.55 -0.2 567,428 + MIT1002_00520 0.55 -0.1 567,428 + MIT1002_00520 0.55 -2.6 567,428 + MIT1002_00520 0.55 +0.2 567,428 + MIT1002_00520 0.55 -0.4 567,428 + MIT1002_00520 0.55 -0.3 567,436 - MIT1002_00520 0.56 +1.2 567,436 - MIT1002_00520 0.56 +0.2 567,436 - MIT1002_00520 0.56 +0.8 567,436 - MIT1002_00520 0.56 -0.7 567,436 - MIT1002_00520 0.56 +0.2 567,436 - MIT1002_00520 0.56 -0.9 567,436 - MIT1002_00520 0.56 -0.3 567,436 - MIT1002_00520 0.56 -1.1 567,528 - MIT1002_00520 0.63 +0.2 567,604 - MIT1002_00520 0.69 +0.6 567,644 - MIT1002_00520 0.72 +0.3 567,653 - MIT1002_00520 0.73 +0.4 567,721 + MIT1002_00520 0.78 -0.2 567,726 + MIT1002_00520 0.78 +0.4 567,750 + MIT1002_00520 0.80 -1.0 567,758 - MIT1002_00520 0.81 +0.2 567,762 + MIT1002_00520 0.81 -1.3 567,837 - MIT1002_00520 0.87 +0.8 567,837 - MIT1002_00520 0.87 +0.2 567,954 - -0.7 567,954 - +0.2 568,030 - -0.1 568,150 + -0.1 568,158 - +0.5 568,165 + -2.1 568,195 - -1.4 568,319 - -0.9 568,337 - MIT1002_00521 0.11 -1.0 568,405 - MIT1002_00521 0.25 -3.2 568,405 - MIT1002_00521 0.25 -2.1 568,435 + MIT1002_00521 0.31 -0.6 568,440 - MIT1002_00521 0.32 -1.1 568,515 + MIT1002_00521 0.47 -0.9 568,551 - MIT1002_00521 0.55 -5.3 568,561 + MIT1002_00521 0.57 -3.2 568,574 + MIT1002_00521 0.59 -2.0 568,799 - -2.0 568,926 + MIT1002_00522 0.14 -3.6 568,943 - MIT1002_00522 0.15 -1.6 568,946 - MIT1002_00522 0.15 -5.5 568,978 - MIT1002_00522 0.18 -3.7 569,020 - MIT1002_00522 0.22 -4.9 569,157 + MIT1002_00522 0.34 -3.9 569,332 + MIT1002_00522 0.49 -5.3 569,364 - MIT1002_00522 0.52 -0.4 569,366 - MIT1002_00522 0.52 -1.4 569,366 - MIT1002_00522 0.52 -2.9 569,398 - MIT1002_00522 0.55 -4.2 569,449 + MIT1002_00522 0.60 -4.5 569,479 + MIT1002_00522 0.62 -2.6 569,480 + MIT1002_00522 0.62 -2.1 569,488 - MIT1002_00522 0.63 -3.6 569,515 + MIT1002_00522 0.65 -6.3 569,523 - MIT1002_00522 0.66 -3.9 569,576 - MIT1002_00522 0.71 -3.4 569,724 + MIT1002_00522 0.84 -1.5 569,732 - MIT1002_00522 0.84 -0.6 569,738 + MIT1002_00522 0.85 -5.1 569,738 + MIT1002_00522 0.85 -6.5
Or see this region's nucleotide sequence