Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00504

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00503 and MIT1002_00504 overlap by 1 nucleotidesMIT1002_00504 and MIT1002_00505 are separated by 80 nucleotides MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662 _00503 MIT1002_00504: MIT1002_00504 - Acetolactate synthase isozyme 3 small subunit, at 548,662 to 549,159 _00504 MIT1002_00505: MIT1002_00505 - hypothetical protein, at 549,240 to 550,301 _00505 Position (kb) 548 549 550Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2at 547.723 kb on + strand, within MIT1002_00503at 547.739 kb on - strand, within MIT1002_00503at 547.741 kb on + strand, within MIT1002_00503at 547.751 kb on + strand, within MIT1002_00503at 547.822 kb on + strand, within MIT1002_00503at 547.861 kb on - strand, within MIT1002_00503at 548.027 kb on - strand, within MIT1002_00503at 548.052 kb on + strand, within MIT1002_00503at 548.064 kb on - strand, within MIT1002_00503at 548.083 kb on - strand, within MIT1002_00503at 548.155 kb on + strand, within MIT1002_00503at 548.163 kb on - strand, within MIT1002_00503at 548.163 kb on - strand, within MIT1002_00503at 548.174 kb on - strand, within MIT1002_00503at 548.190 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.258 kb on + strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.266 kb on - strand, within MIT1002_00503at 548.290 kb on - strand, within MIT1002_00503at 548.317 kb on + strand, within MIT1002_00503at 548.325 kb on - strand, within MIT1002_00503at 548.422 kb on + strand, within MIT1002_00503at 548.428 kb on - strand, within MIT1002_00503at 548.480 kb on + strand, within MIT1002_00503at 548.480 kb on + strand, within MIT1002_00503at 548.530 kb on - strandat 548.569 kb on + strandat 548.601 kb on - strandat 548.601 kb on - strandat 548.651 kb on + strandat 548.707 kb on + strandat 548.717 kb on - strand, within MIT1002_00504at 548.770 kb on - strand, within MIT1002_00504at 548.859 kb on + strand, within MIT1002_00504at 548.859 kb on + strand, within MIT1002_00504at 548.867 kb on - strand, within MIT1002_00504at 548.933 kb on - strand, within MIT1002_00504at 549.018 kb on + strand, within MIT1002_00504at 549.074 kb on + strand, within MIT1002_00504at 549.082 kb on - strand, within MIT1002_00504at 549.120 kb on + strandat 549.143 kb on - strandat 549.269 kb on - strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.275 kb on + strandat 549.283 kb on - strandat 549.283 kb on - strandat 549.283 kb on - strandat 549.283 kb on - strandat 549.367 kb on - strand, within MIT1002_00505at 549.367 kb on - strand, within MIT1002_00505at 549.382 kb on - strand, within MIT1002_00505at 549.382 kb on - strand, within MIT1002_00505at 549.382 kb on - strand, within MIT1002_00505at 549.416 kb on + strand, within MIT1002_00505at 549.451 kb on + strand, within MIT1002_00505at 549.494 kb on + strand, within MIT1002_00505at 549.494 kb on + strand, within MIT1002_00505at 549.502 kb on - strand, within MIT1002_00505at 549.613 kb on - strand, within MIT1002_00505at 549.639 kb on - strand, within MIT1002_00505at 549.644 kb on - strand, within MIT1002_00505at 549.663 kb on + strand, within MIT1002_00505at 549.691 kb on + strand, within MIT1002_00505at 549.741 kb on + strand, within MIT1002_00505at 549.820 kb on + strand, within MIT1002_00505at 549.820 kb on + strand, within MIT1002_00505at 549.820 kb on + strand, within MIT1002_00505at 549.833 kb on - strand, within MIT1002_00505at 549.833 kb on - strand, within MIT1002_00505at 549.893 kb on + strand, within MIT1002_00505at 549.893 kb on + strand, within MIT1002_00505at 549.893 kb on + strand, within MIT1002_00505at 549.893 kb on + strand, within MIT1002_00505at 549.893 kb on + strand, within MIT1002_00505at 549.895 kb on - strand, within MIT1002_00505at 549.901 kb on - strand, within MIT1002_00505at 549.901 kb on - strand, within MIT1002_00505at 549.901 kb on - strand, within MIT1002_00505at 549.941 kb on + strand, within MIT1002_00505at 549.963 kb on + strand, within MIT1002_00505at 549.971 kb on - strand, within MIT1002_00505at 549.994 kb on - strand, within MIT1002_00505at 549.994 kb on - strand, within MIT1002_00505at 549.994 kb on - strand, within MIT1002_00505at 550.042 kb on - strand, within MIT1002_00505at 550.042 kb on - strand, within MIT1002_00505at 550.042 kb on - strand, within MIT1002_00505at 550.046 kb on + strand, within MIT1002_00505at 550.046 kb on + strand, within MIT1002_00505at 550.108 kb on - strand, within MIT1002_00505at 550.111 kb on + strand, within MIT1002_00505at 550.111 kb on + strand, within MIT1002_00505at 550.111 kb on + strand, within MIT1002_00505at 550.119 kb on - strand, within MIT1002_00505at 550.119 kb on - strand, within MIT1002_00505at 550.119 kb on - strand, within MIT1002_00505at 550.158 kb on + strand, within MIT1002_00505

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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547,723 + MIT1002_00503 0.45 -4.4
547,739 - MIT1002_00503 0.46 -2.2
547,741 + MIT1002_00503 0.46 -4.2
547,751 + MIT1002_00503 0.47 -2.2
547,822 + MIT1002_00503 0.51 -1.9
547,861 - MIT1002_00503 0.53 -3.1
548,027 - MIT1002_00503 0.63 -4.2
548,052 + MIT1002_00503 0.64 -4.6
548,064 - MIT1002_00503 0.65 -3.4
548,083 - MIT1002_00503 0.66 -4.5
548,155 + MIT1002_00503 0.70 -2.6
548,163 - MIT1002_00503 0.71 -2.0
548,163 - MIT1002_00503 0.71 -2.8
548,174 - MIT1002_00503 0.72 -1.5
548,190 + MIT1002_00503 0.72 -2.5
548,258 + MIT1002_00503 0.76 -2.3
548,258 + MIT1002_00503 0.76 -4.1
548,258 + MIT1002_00503 0.76 -3.1
548,258 + MIT1002_00503 0.76 -2.6
548,258 + MIT1002_00503 0.76 -0.1
548,266 - MIT1002_00503 0.77 -2.3
548,266 - MIT1002_00503 0.77 -1.9
548,266 - MIT1002_00503 0.77 -0.4
548,266 - MIT1002_00503 0.77 -0.6
548,266 - MIT1002_00503 0.77 -3.3
548,290 - MIT1002_00503 0.78 -2.2
548,317 + MIT1002_00503 0.80 -4.1
548,325 - MIT1002_00503 0.80 -1.8
548,422 + MIT1002_00503 0.86 -4.9
548,428 - MIT1002_00503 0.86 -4.0
548,480 + MIT1002_00503 0.89 -6.2
548,480 + MIT1002_00503 0.89 -3.4
548,530 - -3.6
548,569 + -3.8
548,601 - -4.4
548,601 - -6.4
548,651 + -4.5
548,707 + -5.4
548,717 - MIT1002_00504 0.11 -9.4
548,770 - MIT1002_00504 0.22 -4.2
548,859 + MIT1002_00504 0.40 -3.0
548,859 + MIT1002_00504 0.40 -5.1
548,867 - MIT1002_00504 0.41 -2.1
548,933 - MIT1002_00504 0.54 -3.6
549,018 + MIT1002_00504 0.71 -3.7
549,074 + MIT1002_00504 0.83 -1.6
549,082 - MIT1002_00504 0.84 -3.5
549,120 + -1.6
549,143 - -2.0
549,269 - -0.1
549,275 + +0.7
549,275 + +0.7
549,275 + -0.6
549,275 + -0.0
549,275 + +0.8
549,275 + -0.2
549,283 - +0.4
549,283 - -0.9
549,283 - -0.5
549,283 - +1.3
549,367 - MIT1002_00505 0.12 +0.3
549,367 - MIT1002_00505 0.12 +0.6
549,382 - MIT1002_00505 0.13 +0.5
549,382 - MIT1002_00505 0.13 +0.4
549,382 - MIT1002_00505 0.13 -0.1
549,416 + MIT1002_00505 0.17 -0.6
549,451 + MIT1002_00505 0.20 -0.2
549,494 + MIT1002_00505 0.24 -1.3
549,494 + MIT1002_00505 0.24 -0.8
549,502 - MIT1002_00505 0.25 -2.4
549,613 - MIT1002_00505 0.35 +1.6
549,639 - MIT1002_00505 0.38 -0.7
549,644 - MIT1002_00505 0.38 -0.3
549,663 + MIT1002_00505 0.40 +0.2
549,691 + MIT1002_00505 0.42 +0.5
549,741 + MIT1002_00505 0.47 -0.0
549,820 + MIT1002_00505 0.55 +0.9
549,820 + MIT1002_00505 0.55 +0.6
549,820 + MIT1002_00505 0.55 -0.6
549,833 - MIT1002_00505 0.56 -0.6
549,833 - MIT1002_00505 0.56 +0.1
549,893 + MIT1002_00505 0.61 +0.3
549,893 + MIT1002_00505 0.61 -0.1
549,893 + MIT1002_00505 0.61 -0.2
549,893 + MIT1002_00505 0.61 +0.4
549,893 + MIT1002_00505 0.61 +0.3
549,895 - MIT1002_00505 0.62 +1.4
549,901 - MIT1002_00505 0.62 -0.3
549,901 - MIT1002_00505 0.62 +1.0
549,901 - MIT1002_00505 0.62 -0.2
549,941 + MIT1002_00505 0.66 -0.1
549,963 + MIT1002_00505 0.68 +2.0
549,971 - MIT1002_00505 0.69 +2.7
549,994 - MIT1002_00505 0.71 +0.7
549,994 - MIT1002_00505 0.71 +1.0
549,994 - MIT1002_00505 0.71 +0.5
550,042 - MIT1002_00505 0.76 -0.2
550,042 - MIT1002_00505 0.76 -0.1
550,042 - MIT1002_00505 0.76 +1.2
550,046 + MIT1002_00505 0.76 +1.2
550,046 + MIT1002_00505 0.76 -0.1
550,108 - MIT1002_00505 0.82 +1.3
550,111 + MIT1002_00505 0.82 +0.6
550,111 + MIT1002_00505 0.82 -0.8
550,111 + MIT1002_00505 0.82 +1.9
550,119 - MIT1002_00505 0.83 -0.9
550,119 - MIT1002_00505 0.83 +0.4
550,119 - MIT1002_00505 0.83 +0.5
550,158 + MIT1002_00505 0.86 +0.1

Or see this region's nucleotide sequence