Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00492

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00490 and MIT1002_00491 are separated by 156 nucleotidesMIT1002_00491 and MIT1002_00492 are separated by 121 nucleotidesMIT1002_00492 and MIT1002_00493 are separated by 32 nucleotidesMIT1002_00493 and MIT1002_00494 are separated by 3 nucleotides MIT1002_00490: MIT1002_00490 - Divergent polysaccharide deacetylase, at 534,310 to 535,215 _00490 MIT1002_00491: MIT1002_00491 - MerC mercury resistance protein, at 535,372 to 535,800 _00491 MIT1002_00492: MIT1002_00492 - Glycerophosphoryl diester phosphodiesterase, at 535,922 to 536,614 _00492 MIT1002_00493: MIT1002_00493 - threonine and homoserine efflux system, at 536,647 to 537,522 _00493 MIT1002_00494: MIT1002_00494 - Phosphatidylserine decarboxylase proenzyme, at 537,526 to 538,473 _00494 Position (kb) 535 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 534.973 kb on + strand, within MIT1002_00490at 534.998 kb on + strand, within MIT1002_00490at 534.998 kb on + strand, within MIT1002_00490at 535.006 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.012 kb on - strand, within MIT1002_00490at 535.089 kb on + strand, within MIT1002_00490at 535.102 kb on + strand, within MIT1002_00490at 535.112 kb on + strand, within MIT1002_00490at 535.120 kb on - strand, within MIT1002_00490at 535.145 kb on + strandat 535.156 kb on + strandat 535.156 kb on + strandat 535.156 kb on + strandat 535.191 kb on + strandat 535.191 kb on + strandat 535.199 kb on - strandat 535.209 kb on - strandat 535.438 kb on + strand, within MIT1002_00491at 535.448 kb on + strand, within MIT1002_00491at 535.470 kb on - strand, within MIT1002_00491at 535.479 kb on - strand, within MIT1002_00491at 535.517 kb on - strand, within MIT1002_00491at 535.517 kb on - strand, within MIT1002_00491at 535.517 kb on - strand, within MIT1002_00491at 535.528 kb on + strand, within MIT1002_00491at 535.536 kb on - strand, within MIT1002_00491at 535.582 kb on - strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.672 kb on + strand, within MIT1002_00491at 535.680 kb on - strand, within MIT1002_00491at 535.680 kb on - strand, within MIT1002_00491at 535.680 kb on - strand, within MIT1002_00491at 535.688 kb on - strand, within MIT1002_00491at 535.691 kb on + strand, within MIT1002_00491at 535.701 kb on + strand, within MIT1002_00491at 535.722 kb on + strand, within MIT1002_00491at 535.751 kb on - strand, within MIT1002_00491at 535.865 kb on + strandat 535.865 kb on + strandat 535.873 kb on - strandat 535.888 kb on + strandat 535.927 kb on - strandat 536.077 kb on - strand, within MIT1002_00492at 536.088 kb on + strand, within MIT1002_00492at 536.189 kb on - strand, within MIT1002_00492at 536.281 kb on + strand, within MIT1002_00492at 536.289 kb on - strand, within MIT1002_00492at 536.291 kb on + strand, within MIT1002_00492at 536.301 kb on - strand, within MIT1002_00492at 536.303 kb on + strand, within MIT1002_00492at 536.303 kb on + strand, within MIT1002_00492at 536.383 kb on + strand, within MIT1002_00492at 536.419 kb on - strand, within MIT1002_00492at 536.464 kb on - strand, within MIT1002_00492at 536.464 kb on - strand, within MIT1002_00492at 536.472 kb on - strand, within MIT1002_00492at 536.505 kb on - strand, within MIT1002_00492at 536.548 kb on + strandat 536.557 kb on + strandat 536.565 kb on - strandat 536.575 kb on - strandat 536.670 kb on + strandat 536.686 kb on - strandat 536.802 kb on + strand, within MIT1002_00493at 536.917 kb on + strand, within MIT1002_00493at 536.928 kb on + strand, within MIT1002_00493at 536.946 kb on - strand, within MIT1002_00493at 536.958 kb on - strand, within MIT1002_00493at 536.971 kb on + strand, within MIT1002_00493at 536.981 kb on + strand, within MIT1002_00493at 536.981 kb on + strand, within MIT1002_00493at 536.989 kb on - strand, within MIT1002_00493at 536.989 kb on - strand, within MIT1002_00493at 536.994 kb on - strand, within MIT1002_00493at 536.996 kb on + strand, within MIT1002_00493at 536.996 kb on + strand, within MIT1002_00493at 537.062 kb on + strand, within MIT1002_00493at 537.075 kb on - strand, within MIT1002_00493at 537.083 kb on - strand, within MIT1002_00493at 537.122 kb on - strand, within MIT1002_00493at 537.171 kb on + strand, within MIT1002_00493at 537.171 kb on + strand, within MIT1002_00493at 537.228 kb on - strand, within MIT1002_00493at 537.229 kb on - strand, within MIT1002_00493at 537.237 kb on + strand, within MIT1002_00493at 537.249 kb on + strand, within MIT1002_00493at 537.249 kb on + strand, within MIT1002_00493at 537.255 kb on - strand, within MIT1002_00493at 537.257 kb on - strand, within MIT1002_00493at 537.257 kb on - strand, within MIT1002_00493at 537.257 kb on - strand, within MIT1002_00493at 537.289 kb on - strand, within MIT1002_00493at 537.289 kb on - strand, within MIT1002_00493at 537.294 kb on - strand, within MIT1002_00493at 537.304 kb on + strand, within MIT1002_00493at 537.310 kb on + strand, within MIT1002_00493at 537.315 kb on + strand, within MIT1002_00493at 537.384 kb on + strand, within MIT1002_00493at 537.394 kb on + strand, within MIT1002_00493at 537.394 kb on + strand, within MIT1002_00493at 537.414 kb on + strand, within MIT1002_00493at 537.416 kb on - strand, within MIT1002_00493at 537.451 kb on + strandat 537.602 kb on + strandat 537.602 kb on + strandat 537.602 kb on + strandat 537.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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534,973 + MIT1002_00490 0.73 +0.1
534,998 + MIT1002_00490 0.76 +0.8
534,998 + MIT1002_00490 0.76 -0.3
535,006 - MIT1002_00490 0.77 +0.2
535,011 - MIT1002_00490 0.77 -1.4
535,011 - MIT1002_00490 0.77 +0.1
535,011 - MIT1002_00490 0.77 -0.5
535,012 - MIT1002_00490 0.77 -3.6
535,089 + MIT1002_00490 0.86 +1.5
535,102 + MIT1002_00490 0.87 +0.0
535,112 + MIT1002_00490 0.89 -0.9
535,120 - MIT1002_00490 0.89 -0.5
535,145 + -2.8
535,156 + -0.2
535,156 + -2.8
535,156 + +0.3
535,191 + +0.1
535,191 + +2.2
535,199 - -0.6
535,209 - -0.2
535,438 + MIT1002_00491 0.15 +0.2
535,448 + MIT1002_00491 0.18 +1.1
535,470 - MIT1002_00491 0.23 +0.2
535,479 - MIT1002_00491 0.25 -0.9
535,517 - MIT1002_00491 0.34 -1.6
535,517 - MIT1002_00491 0.34 +0.4
535,517 - MIT1002_00491 0.34 +4.8
535,528 + MIT1002_00491 0.36 +0.0
535,536 - MIT1002_00491 0.38 +0.9
535,582 - MIT1002_00491 0.49 +0.4
535,672 + MIT1002_00491 0.70 -1.2
535,672 + MIT1002_00491 0.70 +0.9
535,672 + MIT1002_00491 0.70 -0.3
535,672 + MIT1002_00491 0.70 +1.0
535,680 - MIT1002_00491 0.72 -0.1
535,680 - MIT1002_00491 0.72 -0.2
535,680 - MIT1002_00491 0.72 +0.0
535,688 - MIT1002_00491 0.74 -2.0
535,691 + MIT1002_00491 0.74 +0.5
535,701 + MIT1002_00491 0.77 +0.5
535,722 + MIT1002_00491 0.82 +0.1
535,751 - MIT1002_00491 0.88 +1.0
535,865 + +0.5
535,865 + -1.4
535,873 - -0.6
535,888 + +1.0
535,927 - -0.3
536,077 - MIT1002_00492 0.22 -0.1
536,088 + MIT1002_00492 0.24 -1.2
536,189 - MIT1002_00492 0.39 -0.5
536,281 + MIT1002_00492 0.52 +0.9
536,289 - MIT1002_00492 0.53 +0.5
536,291 + MIT1002_00492 0.53 +0.4
536,301 - MIT1002_00492 0.55 -2.8
536,303 + MIT1002_00492 0.55 -0.8
536,303 + MIT1002_00492 0.55 -0.1
536,383 + MIT1002_00492 0.67 -0.0
536,419 - MIT1002_00492 0.72 -0.1
536,464 - MIT1002_00492 0.78 -1.0
536,464 - MIT1002_00492 0.78 -0.2
536,472 - MIT1002_00492 0.79 -1.2
536,505 - MIT1002_00492 0.84 -0.1
536,548 + -0.3
536,557 + -0.2
536,565 - -2.6
536,575 - +0.8
536,670 + +0.9
536,686 - +0.1
536,802 + MIT1002_00493 0.18 +0.0
536,917 + MIT1002_00493 0.31 +0.1
536,928 + MIT1002_00493 0.32 +1.1
536,946 - MIT1002_00493 0.34 +0.1
536,958 - MIT1002_00493 0.36 +0.4
536,971 + MIT1002_00493 0.37 -2.8
536,981 + MIT1002_00493 0.38 -1.2
536,981 + MIT1002_00493 0.38 +0.4
536,989 - MIT1002_00493 0.39 +0.4
536,989 - MIT1002_00493 0.39 +0.0
536,994 - MIT1002_00493 0.40 -0.3
536,996 + MIT1002_00493 0.40 +0.7
536,996 + MIT1002_00493 0.40 -2.1
537,062 + MIT1002_00493 0.47 -0.3
537,075 - MIT1002_00493 0.49 +0.8
537,083 - MIT1002_00493 0.50 -0.3
537,122 - MIT1002_00493 0.54 +0.2
537,171 + MIT1002_00493 0.60 -1.0
537,171 + MIT1002_00493 0.60 -0.6
537,228 - MIT1002_00493 0.66 +0.3
537,229 - MIT1002_00493 0.66 +1.5
537,237 + MIT1002_00493 0.67 +0.1
537,249 + MIT1002_00493 0.69 -0.6
537,249 + MIT1002_00493 0.69 -0.4
537,255 - MIT1002_00493 0.69 -2.3
537,257 - MIT1002_00493 0.70 -0.8
537,257 - MIT1002_00493 0.70 +0.8
537,257 - MIT1002_00493 0.70 +0.0
537,289 - MIT1002_00493 0.73 +0.5
537,289 - MIT1002_00493 0.73 -0.1
537,294 - MIT1002_00493 0.74 -1.9
537,304 + MIT1002_00493 0.75 -1.8
537,310 + MIT1002_00493 0.76 -1.0
537,315 + MIT1002_00493 0.76 -0.1
537,384 + MIT1002_00493 0.84 +0.9
537,394 + MIT1002_00493 0.85 -0.0
537,394 + MIT1002_00493 0.85 -0.4
537,414 + MIT1002_00493 0.88 +0.0
537,416 - MIT1002_00493 0.88 +1.3
537,451 + +0.2
537,602 + -0.7
537,602 + +2.1
537,602 + +0.6
537,610 - +0.2

Or see this region's nucleotide sequence