Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00467

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00466 and MIT1002_00467 are separated by 18 nucleotidesMIT1002_00467 and MIT1002_00468 are separated by 53 nucleotides MIT1002_00466: MIT1002_00466 - Amino-acid acetyltransferase, at 509,170 to 510,480 _00466 MIT1002_00467: MIT1002_00467 - Argininosuccinate lyase, at 510,499 to 511,881 _00467 MIT1002_00468: MIT1002_00468 - Argininosuccinate synthase, at 511,935 to 513,146 _00468 Position (kb) 510 511 512Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 509.711 kb on - strand, within MIT1002_00466at 509.795 kb on + strand, within MIT1002_00466at 509.813 kb on - strand, within MIT1002_00466at 509.844 kb on - strand, within MIT1002_00466at 509.847 kb on - strand, within MIT1002_00466at 509.847 kb on - strand, within MIT1002_00466at 509.926 kb on + strand, within MIT1002_00466at 510.012 kb on + strand, within MIT1002_00466at 510.025 kb on + strand, within MIT1002_00466at 510.035 kb on - strand, within MIT1002_00466at 510.065 kb on + strand, within MIT1002_00466at 510.073 kb on - strand, within MIT1002_00466at 510.154 kb on + strand, within MIT1002_00466at 510.169 kb on - strand, within MIT1002_00466at 510.197 kb on - strand, within MIT1002_00466at 510.199 kb on + strand, within MIT1002_00466at 510.230 kb on - strand, within MIT1002_00466at 510.269 kb on - strand, within MIT1002_00466at 510.285 kb on + strand, within MIT1002_00466at 510.293 kb on - strand, within MIT1002_00466at 510.298 kb on + strand, within MIT1002_00466at 510.308 kb on - strand, within MIT1002_00466at 510.323 kb on + strand, within MIT1002_00466at 510.323 kb on + strand, within MIT1002_00466at 510.323 kb on + strand, within MIT1002_00466at 510.323 kb on - strand, within MIT1002_00466at 510.331 kb on - strand, within MIT1002_00466at 510.331 kb on - strand, within MIT1002_00466at 510.341 kb on - strand, within MIT1002_00466at 510.403 kb on + strandat 510.404 kb on + strandat 510.425 kb on + strandat 510.432 kb on + strandat 510.433 kb on - strandat 510.448 kb on - strandat 510.450 kb on + strandat 510.477 kb on - strandat 510.496 kb on - strandat 510.499 kb on - strandat 510.501 kb on + strandat 510.598 kb on + strandat 510.604 kb on + strandat 510.627 kb on + strandat 510.693 kb on - strand, within MIT1002_00467at 510.698 kb on + strand, within MIT1002_00467at 510.698 kb on + strand, within MIT1002_00467at 510.705 kb on - strand, within MIT1002_00467at 510.732 kb on - strand, within MIT1002_00467at 510.732 kb on - strand, within MIT1002_00467at 510.732 kb on - strand, within MIT1002_00467at 510.734 kb on + strand, within MIT1002_00467at 510.734 kb on + strand, within MIT1002_00467at 510.734 kb on + strand, within MIT1002_00467at 510.742 kb on - strand, within MIT1002_00467at 510.756 kb on - strand, within MIT1002_00467at 510.782 kb on - strand, within MIT1002_00467at 510.804 kb on + strand, within MIT1002_00467at 510.820 kb on - strand, within MIT1002_00467at 510.822 kb on - strand, within MIT1002_00467at 510.847 kb on - strand, within MIT1002_00467at 510.946 kb on + strand, within MIT1002_00467at 510.995 kb on + strand, within MIT1002_00467at 511.052 kb on + strand, within MIT1002_00467at 511.084 kb on + strand, within MIT1002_00467at 511.092 kb on - strand, within MIT1002_00467at 511.154 kb on - strand, within MIT1002_00467at 511.183 kb on + strand, within MIT1002_00467at 511.189 kb on + strand, within MIT1002_00467at 511.189 kb on + strand, within MIT1002_00467at 511.191 kb on - strand, within MIT1002_00467at 511.197 kb on - strand, within MIT1002_00467at 511.197 kb on - strand, within MIT1002_00467at 511.200 kb on + strand, within MIT1002_00467at 511.216 kb on - strand, within MIT1002_00467at 511.218 kb on - strand, within MIT1002_00467at 511.236 kb on + strand, within MIT1002_00467at 511.293 kb on + strand, within MIT1002_00467at 511.294 kb on + strand, within MIT1002_00467at 511.294 kb on + strand, within MIT1002_00467at 511.294 kb on + strand, within MIT1002_00467at 511.302 kb on - strand, within MIT1002_00467at 511.311 kb on - strand, within MIT1002_00467at 511.338 kb on + strand, within MIT1002_00467at 511.347 kb on - strand, within MIT1002_00467at 511.372 kb on - strand, within MIT1002_00467at 511.378 kb on + strand, within MIT1002_00467at 511.378 kb on - strand, within MIT1002_00467at 511.383 kb on - strand, within MIT1002_00467at 511.398 kb on + strand, within MIT1002_00467at 511.408 kb on + strand, within MIT1002_00467at 511.408 kb on + strand, within MIT1002_00467at 511.416 kb on - strand, within MIT1002_00467at 511.424 kb on + strand, within MIT1002_00467at 511.425 kb on - strand, within MIT1002_00467at 511.498 kb on + strand, within MIT1002_00467at 511.512 kb on - strand, within MIT1002_00467at 511.566 kb on - strand, within MIT1002_00467at 511.583 kb on - strand, within MIT1002_00467at 511.693 kb on + strand, within MIT1002_00467at 511.698 kb on + strand, within MIT1002_00467at 511.698 kb on + strand, within MIT1002_00467at 511.737 kb on - strand, within MIT1002_00467at 511.782 kb on - strandat 511.828 kb on - strandat 511.870 kb on + strandat 511.878 kb on - strandat 511.880 kb on + strandat 511.890 kb on - strandat 511.901 kb on + strandat 511.906 kb on + strandat 511.906 kb on + strandat 511.909 kb on - strandat 511.909 kb on - strandat 511.914 kb on - strandat 511.921 kb on + strandat 511.921 kb on + strandat 511.940 kb on - strandat 511.986 kb on - strandat 512.000 kb on - strandat 512.084 kb on + strand, within MIT1002_00468at 512.104 kb on + strand, within MIT1002_00468at 512.128 kb on - strand, within MIT1002_00468at 512.160 kb on + strand, within MIT1002_00468at 512.207 kb on - strand, within MIT1002_00468at 512.207 kb on - strand, within MIT1002_00468at 512.289 kb on - strand, within MIT1002_00468at 512.355 kb on + strand, within MIT1002_00468at 512.375 kb on + strand, within MIT1002_00468at 512.375 kb on + strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.489 kb on + strand, within MIT1002_00468at 512.490 kb on - strand, within MIT1002_00468at 512.494 kb on + strand, within MIT1002_00468at 512.497 kb on - strand, within MIT1002_00468at 512.499 kb on + strand, within MIT1002_00468at 512.502 kb on - strand, within MIT1002_00468at 512.529 kb on + strand, within MIT1002_00468at 512.532 kb on - strand, within MIT1002_00468at 512.537 kb on - strand, within MIT1002_00468at 512.599 kb on - strand, within MIT1002_00468at 512.710 kb on + strand, within MIT1002_00468at 512.726 kb on + strand, within MIT1002_00468at 512.726 kb on + strand, within MIT1002_00468at 512.777 kb on - strand, within MIT1002_00468at 512.835 kb on - strand, within MIT1002_00468at 512.866 kb on + strand, within MIT1002_00468at 512.879 kb on + strand, within MIT1002_00468

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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509,711 - MIT1002_00466 0.41 -7.2
509,795 + MIT1002_00466 0.48 -3.2
509,813 - MIT1002_00466 0.49 -4.1
509,844 - MIT1002_00466 0.51 -3.3
509,847 - MIT1002_00466 0.52 -4.8
509,847 - MIT1002_00466 0.52 -2.1
509,926 + MIT1002_00466 0.58 -2.7
510,012 + MIT1002_00466 0.64 -1.2
510,025 + MIT1002_00466 0.65 -3.4
510,035 - MIT1002_00466 0.66 -4.4
510,065 + MIT1002_00466 0.68 -2.3
510,073 - MIT1002_00466 0.69 -1.4
510,154 + MIT1002_00466 0.75 -4.4
510,169 - MIT1002_00466 0.76 -1.2
510,197 - MIT1002_00466 0.78 -2.6
510,199 + MIT1002_00466 0.78 -4.2
510,230 - MIT1002_00466 0.81 -4.9
510,269 - MIT1002_00466 0.84 -0.6
510,285 + MIT1002_00466 0.85 -3.5
510,293 - MIT1002_00466 0.86 -3.8
510,298 + MIT1002_00466 0.86 -6.5
510,308 - MIT1002_00466 0.87 -6.5
510,323 + MIT1002_00466 0.88 -4.8
510,323 + MIT1002_00466 0.88 -7.3
510,323 + MIT1002_00466 0.88 -3.2
510,323 - MIT1002_00466 0.88 -0.6
510,331 - MIT1002_00466 0.89 -4.5
510,331 - MIT1002_00466 0.89 -3.2
510,341 - MIT1002_00466 0.89 -1.6
510,403 + -2.9
510,404 + -1.8
510,425 + -2.4
510,432 + -2.8
510,433 - -3.3
510,448 - -4.7
510,450 + -3.3
510,477 - -1.9
510,496 - +1.1
510,499 - +1.5
510,501 + -3.1
510,598 + -1.7
510,604 + -3.4
510,627 + -4.3
510,693 - MIT1002_00467 0.14 -4.8
510,698 + MIT1002_00467 0.14 -3.2
510,698 + MIT1002_00467 0.14 -2.1
510,705 - MIT1002_00467 0.15 -1.2
510,732 - MIT1002_00467 0.17 -1.8
510,732 - MIT1002_00467 0.17 -2.2
510,732 - MIT1002_00467 0.17 -5.6
510,734 + MIT1002_00467 0.17 -4.6
510,734 + MIT1002_00467 0.17 -6.1
510,734 + MIT1002_00467 0.17 -4.3
510,742 - MIT1002_00467 0.18 -2.5
510,756 - MIT1002_00467 0.19 -4.6
510,782 - MIT1002_00467 0.20 -2.2
510,804 + MIT1002_00467 0.22 -2.7
510,820 - MIT1002_00467 0.23 -3.0
510,822 - MIT1002_00467 0.23 -3.5
510,847 - MIT1002_00467 0.25 -3.9
510,946 + MIT1002_00467 0.32 -6.2
510,995 + MIT1002_00467 0.36 -4.4
511,052 + MIT1002_00467 0.40 -4.6
511,084 + MIT1002_00467 0.42 -3.2
511,092 - MIT1002_00467 0.43 -0.6
511,154 - MIT1002_00467 0.47 -2.6
511,183 + MIT1002_00467 0.49 -2.6
511,189 + MIT1002_00467 0.50 -3.9
511,189 + MIT1002_00467 0.50 -2.4
511,191 - MIT1002_00467 0.50 -4.2
511,197 - MIT1002_00467 0.50 -1.4
511,197 - MIT1002_00467 0.50 -2.4
511,200 + MIT1002_00467 0.51 -3.8
511,216 - MIT1002_00467 0.52 -1.5
511,218 - MIT1002_00467 0.52 -4.0
511,236 + MIT1002_00467 0.53 -2.2
511,293 + MIT1002_00467 0.57 -2.6
511,294 + MIT1002_00467 0.57 -4.4
511,294 + MIT1002_00467 0.57 -2.2
511,294 + MIT1002_00467 0.57 -1.9
511,302 - MIT1002_00467 0.58 -5.5
511,311 - MIT1002_00467 0.59 -1.2
511,338 + MIT1002_00467 0.61 -3.2
511,347 - MIT1002_00467 0.61 -4.3
511,372 - MIT1002_00467 0.63 -4.1
511,378 + MIT1002_00467 0.64 -3.9
511,378 - MIT1002_00467 0.64 -2.3
511,383 - MIT1002_00467 0.64 -0.6
511,398 + MIT1002_00467 0.65 -4.1
511,408 + MIT1002_00467 0.66 -2.9
511,408 + MIT1002_00467 0.66 -2.2
511,416 - MIT1002_00467 0.66 -2.6
511,424 + MIT1002_00467 0.67 -3.9
511,425 - MIT1002_00467 0.67 -5.1
511,498 + MIT1002_00467 0.72 -4.8
511,512 - MIT1002_00467 0.73 -3.9
511,566 - MIT1002_00467 0.77 -7.5
511,583 - MIT1002_00467 0.78 -3.9
511,693 + MIT1002_00467 0.86 -4.7
511,698 + MIT1002_00467 0.87 -3.6
511,698 + MIT1002_00467 0.87 -3.4
511,737 - MIT1002_00467 0.90 -6.9
511,782 - -2.3
511,828 - -5.6
511,870 + -4.8
511,878 - -3.6
511,880 + -2.2
511,890 - -0.1
511,901 + -3.5
511,906 + -1.9
511,906 + -1.9
511,909 - +1.6
511,909 - +1.1
511,914 - +0.1
511,921 + -2.5
511,921 + -4.7
511,940 - +0.0
511,986 - -3.9
512,000 - -3.0
512,084 + MIT1002_00468 0.12 -3.7
512,104 + MIT1002_00468 0.14 -3.7
512,128 - MIT1002_00468 0.16 -3.4
512,160 + MIT1002_00468 0.19 -3.2
512,207 - MIT1002_00468 0.22 -3.5
512,207 - MIT1002_00468 0.22 -5.5
512,289 - MIT1002_00468 0.29 -1.7
512,355 + MIT1002_00468 0.35 -1.7
512,375 + MIT1002_00468 0.36 -2.6
512,375 + MIT1002_00468 0.36 -2.1
512,383 - MIT1002_00468 0.37 -6.4
512,383 - MIT1002_00468 0.37 -1.0
512,383 - MIT1002_00468 0.37 -3.2
512,383 - MIT1002_00468 0.37 -4.0
512,383 - MIT1002_00468 0.37 -5.2
512,489 + MIT1002_00468 0.46 -3.5
512,490 - MIT1002_00468 0.46 -3.3
512,494 + MIT1002_00468 0.46 -0.6
512,497 - MIT1002_00468 0.46 -2.2
512,499 + MIT1002_00468 0.47 -3.5
512,502 - MIT1002_00468 0.47 -5.3
512,529 + MIT1002_00468 0.49 -3.0
512,532 - MIT1002_00468 0.49 -4.3
512,537 - MIT1002_00468 0.50 -1.9
512,599 - MIT1002_00468 0.55 -5.1
512,710 + MIT1002_00468 0.64 -3.1
512,726 + MIT1002_00468 0.65 -2.0
512,726 + MIT1002_00468 0.65 -3.3
512,777 - MIT1002_00468 0.69 -1.5
512,835 - MIT1002_00468 0.74 -4.1
512,866 + MIT1002_00468 0.77 -5.2
512,879 + MIT1002_00468 0.78 -3.2

Or see this region's nucleotide sequence